KEGG   Clostridium ljungdahlii: CLJU_c39170
Entry
CLJU_c39170       CDS       T01276                                 
Name
(GenBank) predicted RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
clj  Clostridium ljungdahlii
Pathway
clj02020  Two-component system
clj02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:clj00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CLJU_c39170
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    CLJU_c39170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clj03021]
    CLJU_c39170
Transcription machinery [BR:clj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CLJU_c39170
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID Sigma70_r4 HTH_12 HTH_38 MarR HTH_Crp_2 Sigma70_r4_2 HTH_21 TINF2_N
Other DBs
NCBI-ProteinID: ADK16942
UniProt: D8GUR5
Position
complement(4263165..4264532)
AA seq 455 aa
MNMDFGLNLTQEQKLIMTQQMQLSIKMLQMSSFELQEYIEKEFQQNPVLDVKEPDSTEIE
KDKLDYKEIIKSLNSNNFSHQSYQKSDEEEVSPFNFISHKKSLKEYLKEEIMGLNEKDYV
KSICSYIIENIDHRGYLVIEEGEIEKDLKISTKLVKYCIGIIQTLEPYGIGARNLSECLR
IQARQRKVKDENIFIIIDKYLELIAENKYNVIAKNMGINVKQAQEYGDIIKTFDPKPSRG
FYTGEDVKYIIPDAYIEKIGDKYYIIMNDDLTPRLIINSVYKDIVENQEDKEAADYVKEK
LNSAVFLIKSIQHRKSTIYKVLQKILDLQRDYFDYGERYLKPMTLKDIASSMDMHESTIS
RAIRDKYIYTSRGTIKIKDLFTTGISKGFDGEDVSVLIIKKSIEKIINEEDKKKPLSDQQ
ICDLVNQQDMNISRRTVAKYREEMGIKSSKGRRRF
NT seq 1368 nt   +upstreamnt  +downstreamnt
atgaacatggattttggacttaatttaactcaagaacaaaagttaatcatgactcagcaa
atgcaattatctataaaaatgcttcagatgtcaagctttgaactccaagaatatatagaa
aaagagttccaacaaaaccctgtccttgatgttaaggaaccggactctactgagatagaa
aaagacaaattggattataaggaaattataaagagtcttaattcaaataattttagtcat
caaagctatcaaaaaagtgacgaagaagaagtgtctccttttaactttatttctcacaaa
aagtccttaaaggaatatttaaaagaggaaataatgggcttaaatgaaaaggattacgtt
aaatctatatgttcctatattatagaaaacatagatcatagaggatatttagttatagaa
gaaggggaaatagaaaaagaccttaagatttcaacaaagcttgtaaagtactgtataggt
ataattcaaactttagaaccttatggaataggtgccaggaatttatcagaatgtttgagg
atacaggcaagacaaagaaaagtaaaggatgaaaatatatttataataatagacaaatat
ttagagctaattgcggaaaataagtataatgttatagcaaagaatatggggataaatgtg
aagcaggctcaggaatatggtgatattataaaaacttttgatccaaagccctctagggga
ttttatacaggagaagatgtaaaatatataattccagatgcttatatagaaaaaattgga
gacaaatactatataattatgaatgacgatttaacaccaagactaattataaattcagta
tataaagatatagttgaaaaccaggaggacaaagaagctgcagattatgtaaaagaaaaa
ttaaatagtgcagtatttcttataaaaagtatacaacatagaaaaagtactatatataaa
gtgttacaaaagatattggatttgcaaagggattattttgattatggagaaagatattta
aaaccaatgactctaaaggatatagcaagtagcatggacatgcatgaatctactataagc
agggctataagggataaatatatatatacaagtaggggaacaataaaaataaaggactta
tttaccacagggatatcaaaagggtttgatggagaagatgtgtctgtattaattattaaa
aagagtattgaaaaaataataaatgaagaagacaagaaaaaacctttatctgaccaacaa
atatgtgatttagttaatcaacaagatatgaatatttctagaagaactgtagcaaaatat
agggaggagatgggtataaaatcatcaaaagggagaagaagattttaa

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