KEGG   Capnocytophaga leadbetteri: CGC53_05835
Entry
CGC53_05835       CDS       T05313                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
clk  Capnocytophaga leadbetteri
Pathway
clk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:clk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CGC53_05835 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clk03019]
    CGC53_05835 (rnr)
   03016 Transfer RNA biogenesis [BR:clk03016]
    CGC53_05835 (rnr)
Enzymes [BR:clk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CGC53_05835 (rnr)
Messenger RNA biogenesis [BR:clk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CGC53_05835 (rnr)
Transfer RNA biogenesis [BR:clk03016]
 Prokaryotic type
  tRNA degradation factors
   CGC53_05835 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB OB_Dis3 S1 ISP1_C
Other DBs
NCBI-ProteinID: ATA81899
UniProt: A0A250F9U4
Position
complement(1302793..1304871)
AA seq 692 aa
MKKTTKNQKQGKPGKSKKNRSLAKRNRQEQHKGKHQETSAAHYYIGTLDVNSRGNGYVVV
EGLEQDIFVASNFLNKALHGDRVEVYVFPRFRNRNKMEGEVTKIIERKKQRFVGTVQLHK
NFAFVVPTDPRMYTDFFVQKDKLGGAQDGDRVIVRIDDWKDHHDSPIGVVEQVLGIPGHQ
TTEMHSILAEYGLPYTYPEEVEAFAKALDLSIKEEEISYRRDMRDTLTFTIDPRDAKDFD
DALSFKLLDNGNYEIGVHIADVSHYVKEGTILDEEAYNRATSVYLVDRVVPMLPEVLCNF
ACSLRPDEDKYTFSAVFEMNQRAEVLNVWLGRTATHSSFRFAYEEAQSVIEEAKVGEEYT
IPSDVSITDAERSIPANVVEAILTLNTLAQRLRSKRMRLGAITFDKVEVKFDLDENGNPI
GVYFKESKEANKLIEEFMLLANRKVAEYVAKMKKTFVYRIHDEPDADKLQQFNGVIARFG
YSLNLNNKKTITDSLNNLLEEVKGKKEQNLVDTLAIRSMAKASYSTKNIGHYGLAFDYYT
HFTSPIRRYPDVMVHRLLQLYLDNAPSQSEAEYETKCKHSSQMESLAASAERDSIKYMQV
KYMEGHKNQIFAGVISGVTEWGIYVELNVNKCEGLVRARDIKDDYYTFDEQQYALVGQAT
GRTYQLGDEVMIRVKNTDLLKKQLDFELVESN
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgaaaaagacaactaaaaatcagaaacaaggaaaaccgggaaaatctaagaaaaataga
agtttagccaaacgcaaccgacaagagcagcacaaagggaaacaccaagaaacatctgct
gcacattattatataggtacgctcgatgtcaattcgcgtggtaatggctatgtggtggta
gaaggacttgagcaagacatttttgtagcttctaatttcttaaacaaagccctacacggc
gatagggtagaggtatatgtatttcctcgcttccgcaatcgcaacaagatggaaggcgag
gttacgaaaataatagagcgaaagaaacaacgctttgtaggtacagtgcagctgcataag
aattttgcttttgtagttcctaccgaccctcgtatgtacaccgatttctttgtgcaaaaa
gacaaacttggtggcgcgcaagacggcgaccgcgtaatagtccgtatcgatgattggaaa
gatcaccacgattcacctataggggtagtagagcaagtgctcggcataccagggcaccaa
actaccgagatgcactctattttagcagaatacggtttgccttatacctatcccgaagag
gttgaggcttttgctaaagccttagatctcagcatcaaagaagaagagataagctaccgc
cgcgatatgcgtgatacactcaccttcactatcgaccctcgtgatgctaaagactttgat
gatgccctatctttcaagctgttagataatggcaattacgaaataggggtacacatagcc
gatgtgtcgcactacgtaaaagagggtactattttagatgaagaggcttataatcgtgct
acctctgtctatttagtagatagggtagtgcctatgttgcccgaagtattgtgcaatttt
gcctgctcattgcgtcctgatgaagacaaatacaccttttcagcagtgtttgagatgaat
cagagagcagaagtactaaatgtatggttaggcagaaccgctacacattcgtcttttagg
tttgcttacgaagaggcgcaatcagtgatagaagaagccaaagtaggggaggagtatacc
attccttctgatgtttctatcaccgatgctgagcgttctattcctgcaaatgtagtagag
gctatactgacgctcaatactttagcacaacgtttgcgaagtaagcgtatgcgtttaggg
gctattacttttgataaagtagaggtgaagttcgacctcgacgaaaatggcaatcctata
ggtgtttatttcaaagaaagtaaggaagctaataagttgatagaagaatttatgctattg
gctaaccgcaaggtagctgaatatgtagccaagatgaagaaaactttcgtatatcgcatc
cacgatgaacctgatgccgataaattgcagcagttcaacggggtaatagcgcgttttggt
tatagtttgaatttgaacaacaagaaaacaattaccgattcgctcaataacctgttggaa
gaggtaaaaggcaagaaagaacagaatttagtcgatactttagccatacgttctatggca
aaagcctcttattctactaagaacatagggcattacggtttagcgtttgattattatacc
cattttacatcgcctatacgccgttatcctgacgtgatggtgcaccgtttgttgcaattg
tatttagataatgctccttctcagagtgaagctgagtacgaaaccaaatgcaaacactca
tcacagatggagagtttagcagcttcagcagaacgcgattctatcaaatatatgcaggtg
aaatatatggaaggacataagaatcagatatttgcgggagttatatcaggggtaaccgag
tggggtatttatgtagagctgaatgtaaataagtgtgagggcttagtgcgtgcacgcgac
attaaggacgattattacacttttgacgaacagcaatacgccttggtagggcaggctacc
ggtagaacttaccagcttggcgatgaagtgatgatacgcgttaagaatactgacctgtta
aagaagcagttagattttgaacttgtagagtctaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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