KEGG   Mageeibacillus indolicus: HMPREF0868_1338
Entry
HMPREF0868_1338   CDS       T01181                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clo  Mageeibacillus indolicus
Pathway
clo03410  Base excision repair
clo03430  Mismatch repair
clo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:clo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    HMPREF0868_1338 (recJ)
   03430 Mismatch repair
    HMPREF0868_1338 (recJ)
   03440 Homologous recombination
    HMPREF0868_1338 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clo03400]
    HMPREF0868_1338 (recJ)
DNA repair and recombination proteins [BR:clo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     HMPREF0868_1338 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     HMPREF0868_1338 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      HMPREF0868_1338 (recJ)
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: ADC90943
UniProt: D3R343
Position
411838..413994
AA seq 718 aa
MNLLKHKWTEAPQLPLPTEATKTVAAPLGLSEIIKASRMAETAAQAETTPVDLGEEWHSP
FLFNDMEKAVHTVADVIARHGIVMIHGDYDADGLTATAVLYRYLSQFGLEIYTYIPDRLE
EGYGLAAGGVKSALEHKVDLVITVDCGIVSHDEIAELSAAGILTVVTDHHNCRPTLPAAD
ACLNPKWPGESYPFPYLAGAGVALKLVQGMSEFFHQPEDVWRDLTDFAMIGTVADVMPLV
GENVAIVKEGLSRLNNRARAAWQILLNLPTDETITATTIGFRLAPLINAAGRMGCVSPAL
QIMLTDEADIAGEMAQKLQSLNEKRRELTQAVWTEVERQICENPLFLAAPILFVAGENWH
TGILGILAAKAAAEFNRPTFVLNREVDADGKVLYRGSGRTYGTIDLVATLNTLAPLLEAY
GGHRQAAGVTVTAAALAEIQALLAGKQQAAFTCTELAGLPELCERTPLPCDLEVDLSVCN
VTNWQELQNLQPFGESNPEPVLAWQGCTVLQLRKIGKQKQHLQLLLQDKAGRRIKGIFFG
GGYWADAITAPVKLDLLGVLQINTWQGLTEAQLRVVDIHLCLESLEKANLAVASEICASS
EPAVSDETGYLPRRISENPQAQKQFLAEVYRFLQRVLDQTWQLVDPAWLADVWSWHFKFK
FAGELVEKILTLFAESGILECKSWSAKNEHLYLIGLRQPHNKVKLSDLDAYHKLMHRW
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgaatttactgaaacacaaatggacagaagctccgcaattacctttaccgactgaagcg
acgaagacggttgccgctccattaggcttaagcgagataataaaagcttcacgcatggct
gaaaccgcggcacaagctgagacgacgcccgttgacttgggtgaggaatggcacagtccc
tttttgtttaatgatatggagaaagccgtgcataccgttgccgacgtcatcgccaggcat
ggcatagttatgattcatggcgattatgatgcggacggattgacggccactgctgtttta
taccgctatttaagccaattcggtttggaaatatatacttacatacctgaccgtttggaa
gaaggctacggcttggctgctggcggtgtaaaaagtgctttagaacataaggtggattta
gtcataaccgtagactgcggtatcgtctcgcatgatgagattgctgaactttcggcggca
ggtattttgactgttgttactgaccaccataattgtcgtcctacattgccggctgccgat
gcctgtctcaaccctaaatggccgggggaaagttacccgttcccttatttggccggtgcc
ggggtggcattaaaacttgtgcaaggtatgagcgaatttttccatcaaccggaggatgta
tggcgagatttaaccgattttgccatgatcggtaccgtagctgatgtaatgccgttggtg
ggggaaaatgtcgctatagttaaggagggtctgtcacgacttaacaatcgagcccgtgcc
gcctggcaaattttgctcaatttaccgactgatgaaacaattaccgcgacaacgatcggc
tttaggttggctccattgataaatgctgccggccgaatggggtgtgtaagcccggctctg
caaatcatgctgaccgacgaggccgatattgccggggaaatggcacaaaaactacagtcg
ttgaatgaaaaaaggcgggagcttacgcaagctgtatggacggaagtagagcgtcaaatc
tgtgaaaatccgcttttcttggcggcacctatactatttgttgccggagaaaattggcac
accggtatattgggcatattggcagccaaagcggcagctgagtttaatcgcccgacattt
gttttgaatcgtgaagttgatgctgacggtaaggttttgtaccgcggttccggccggaca
tacggcacaattgatctagttgcgacgttgaataccttagccccgcttttagaagcatac
ggcgggcatcggcaagcggcaggcgttaccgttacggcagcggcgttggcagaaatacag
gcattattggccggaaagcaacaagctgcgtttacttgcacggaattggccggattgccg
gaattatgtgaaagaacaccacttccttgcgatttagaagtagatttatctgtttgtaat
gtgacaaattggcaagaacttcagaatttacaaccgttcggcgaaagtaatcccgagcca
gttttagcttggcaaggatgcaccgtattacagctgcgaaagataggaaagcaaaaacag
cacttacagctgcttttacaggataaagccggccgacggatcaaaggcatattttttggt
ggcggctattgggcggatgcgataacagcaccggtcaaactggatttgctgggcgtttta
caaattaatacttggcaaggcctgaccgaggcccaactgcgggttgttgacattcatcta
tgccttgagtcgcttgaaaaggcaaacttagctgttgcgtcggaaatttgtgcgtcctct
gaacctgccgtttcggatgaaacaggctatttaccgcgccggatcagcgagaatccgcaa
gctcaaaaacagtttttggcagaagtgtaccgttttctgcaacgagttttggaccagacg
tggcaattggttgacccggcttggctggcggacgtctggagttggcacttcaaatttaaa
tttgccggcgaactggtagaaaaaatacttacacttttcgctgaatcaggtatactggaa
tgtaaatcgtggtcggcaaagaatgaacatttatatttaattggcttgcgacaaccgcat
aataaagttaagctttccgatcttgacgcttatcataaactgatgcataggtggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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