KEGG   Clostridium bornimense: CM240_2996
Entry
CM240_2996        CDS       T03165                                 
Symbol
polC
Name
(GenBank) DNA polymerase III PolC-type
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
clt  Clostridium bornimense
Pathway
clt03030  DNA replication
clt03430  Mismatch repair
clt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:clt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CM240_2996 (polC)
   03430 Mismatch repair
    CM240_2996 (polC)
   03440 Homologous recombination
    CM240_2996 (polC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:clt03032]
    CM240_2996 (polC)
   03400 DNA repair and recombination proteins [BR:clt03400]
    CM240_2996 (polC)
Enzymes [BR:clt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CM240_2996 (polC)
DNA replication proteins [BR:clt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     CM240_2996 (polC)
DNA repair and recombination proteins [BR:clt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     CM240_2996 (polC)
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger HHH_6 tRNA_anti-codon RNase_H_2 DNA_pol3_a_NI Rv2179c-like DEDDh_C HHH_3 YhfH
Other DBs
NCBI-ProteinID: CDM70113
UniProt: W6S058
Position
rep2:319628..323974
AA seq 1448 aa
MKRICEVFSDYKVGKNIGDAIVEKTILKRKSKVLVMDISSDKYIDVEEIRELNKFIIKRF
ILNDSIINISYTEEVKQKPIEEAIKNIVLTITEKHPVLKAAASDCDYEISENVIKLKFNA
VVSHLFRDLHYDKEIREAIKSLYEKTYDISFIDKVTKEEQIKINYDNEKNKIIDIKKKIK
AKPLDSHKNTSNVNTKNEIKEEAKKDKKKNDGSLILGRNANIKESVIKITDITPYEETIS
IAGEISNIDTKELRSGKILVSFDLYDGSSSITCKSFLKEDQFEEVLARLKKAKGIRILGN
SGFSKFSNEVEVIANTIVETEGMKKIVREDKADIKRVELHMHTKMSQMDAMTSATDLIKR
AMSWGMKSIAITDHGVVQAFPEAHKLLGRDNPDMKIIYGVEAYLAPDKKPSIFNIKNQSI
DTTYCVLDLETTGFSPKIEKITEIGVMKVQDGKVIDTFSCFVNPEKPIPTRVVEVTNITD
DMVKNADTIDIVFPKLLSFIKDTVLVAHNAEFDIGFLKHNAKELGYDFDFTYLDTLSLAQ
ELFPDYKSYKLGRIAKKLGIKVDVAHRALDDVDTTVKVFNIMIEMLKERGCKSLEDVLIN
GADEVAKKEEYKKLKTYHAIILAKNYTGLKNLYKLVSYSHLDYFYKKPRILKSMFKKYSE
GLILGSACSEGELFQSILLGKSDEEIEAIARDYDYLEIQPLGNDEYLIRNGLVPDEEYIK
DINRKIISLGEKLNKLVVATGDVHFMDPEDEIYRRILEAGQGYKDADNQAPLYLRTTEEM
LEEFSYLGDEKAYEVVVTNTNKISDLCQQISPISPEKCPPHIDGCEQTIKDIAYGKAHEL
YGDPLPEIVQARLDKELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSVVAYM
TGITEVNALPPHYRCHKCKYSDFNDYGYKNGFDLPNKKCPVCGETLDKDGMDIPFETFLG
FNGDKEPDIDLNFSGEYQSKAHKYTEVIFGKGTTFKAGTIGTIAEKTAFGYVKKYYEEKE
ISVNSAEIARISKGCTGIKRTTGQHPGGIIVVPKGREIFEFCPVQHPADDPDSDIITTHF
DYHSIDQNLLKLDILGHDDPTVIRMLQDITGVDPKTIPLDDKETMSLFSSTEALGLKPEQ
INSEVGTFGIPEFGTKFVRGMLLDTLPTTFADLLCISGLSHGTDVWLGNAKDLIDAGTVT
LSEAVCTRDDIMIYLIKKGLPPNTAFKIMELVRKGKALKDPEKWMEYETLMREHDVPEWY
IDSCRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPKAYYAAYFSIRAKAFDAEFMIFGKEK
VKAKMKEINMQGNSAAPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSDATKFKVEDDGLR
PPINSISGMGNVAAEAIINAIHMEPPISSIDNLKKRGKIGNAAIELLRKFGCLNDLPESD
QVSFFDIV
NT seq 4347 nt   +upstreamnt  +downstreamnt
atgaaaagaatatgtgaggtttttagtgattataaagtaggtaaaaatataggtgacgca
atagtagaaaaaactattttaaaaaggaagagtaaagtattggtgatggatatttcttcg
gataagtatattgatgtagaagaaattagggaacttaataaatttataataaagaggttt
atattaaatgattcaataattaatataagttatactgaggaagttaaacagaagccaatt
gaggaagcaattaaaaatatagtacttactattacagaaaaacatcctgttttaaaagcg
gcagctagtgattgtgattatgaaataagtgaaaatgtaataaaactaaaatttaatgcc
gttgtatctcatttatttagagatttacattatgataaggaaattcgagaggctataaag
agcttatatgagaaaacatatgatataagctttatagataaagtcactaaagaagaacaa
ataaagattaattatgataatgagaaaaataaaattattgatataaaaaagaagattaaa
gcaaaacctttggattctcataagaatacatctaatgtaaatacaaaaaatgaaattaaa
gaagaagcaaaaaaagataaaaagaaaaatgatggatcattgattttgggtagaaatgca
aatataaaggaatctgtaattaaaattacggatattactccatatgaagagacaatatca
atagcaggagaaatatcaaatatagatactaaggagttaaggagcggaaagatattagta
tcttttgatttatatgatggatcaagttccattacttgtaaatcatttcttaaagaagac
cagtttgaagaggtattagcgagattaaaaaaggctaaaggaataagaattttaggtaat
tcaggctttagtaaattttcaaatgaagtagaggtgattgctaatactatagtagaaact
gaaggaatgaagaaaatagtaagagaagataaagctgatattaagagggtagagcttcat
atgcatacaaagatgagccagatggatgcaatgactagtgctacagatttaattaagaga
gcaatgagttggggaatgaagtctatagctataacagatcatggtgttgttcaagcgttt
ccagaagctcataagcttttaggaagagataatccagatatgaaaataatttatggagta
gaagcatatcttgcgcctgataaaaagccttctatttttaatatcaaaaatcaaagtata
gatactacttattgtgtactagacttggaaactactggattttcacctaagatagaaaaa
ataactgaaataggtgtaatgaaagtacaagatggaaaagtaatagatacttttagttgt
tttgtaaatcctgaaaagccgattccaactagggtagttgaagttactaatatcactgat
gatatggtaaagaatgcagatactatcgatattgtatttcctaaattactaagctttata
aaagataccgttttagtagcccataatgctgaatttgatattggtttcttaaagcataat
gcaaaagaattgggatatgattttgactttacttatttagatacattatctttagctcaa
gagctttttcctgattataaaagttataaacttggtagaatagctaaaaagcttggtatc
aaggttgatgttgcacatagggcattagatgatgtagatactacagtaaaagtatttaat
ataatgattgaaatgttaaaggaaagagggtgtaaatccttagaagatgtattgattaat
ggtgctgatgaggtagctaaaaaagaagaatataaaaagctaaaaacatatcatgctata
atattagctaaaaattatacagggcttaagaatctatataaacttgtttcttattcgcat
ttagattatttttataaaaaacctcgtatattaaaaagtatgtttaaaaagtattctgaa
gggttaatactaggaagcgcttgtagtgaaggtgaactttttcaatcaattttgcttgga
aagtcagatgaagaaatagaagctattgcaagagattatgattatttagaaatacaacca
ttaggtaatgatgagtatttaataagaaatggtcttgttccagatgaagaatatattaaa
gatatcaatagaaaaataatttctcttggcgaaaagttgaataaacttgtagtagctact
ggtgatgttcactttatggatccagaagatgaaatatatagacgtattttagaagctggt
caaggatataaagatgctgataatcaagctcctttatatctacgaactacagaagaaatg
ttagaagagttttcataccttggagatgaaaaagcttatgaggttgttgtaactaatact
aataaaatttctgatttatgccagcaaattagtcctatatctccagaaaaatgtccacca
catatagatggatgcgaacaaactataaaggatattgcttatgggaaggcacatgaatta
tatggggatcctcttcctgaaatagttcaagcaaggcttgataaagaattagattctatt
ataaaaaatggattttcagttatgtacataatagcgcaaaagcttgtttggaaatctaat
gaagatggatatcttgttggttcaagaggatcagttggatcttcagttgtggcatatatg
acaggtattacagaagtaaatgcattacctccacactatagatgtcataaatgtaaatat
tcagattttaatgactatggttataaaaatggttttgatttgcctaataaaaaatgtcct
gtatgtggtgaaacgttagataaagatggaatggatattccatttgaaactttccttgga
tttaatggagataaggaaccagatatagatttaaacttttctggtgaatatcaaagtaag
gcacacaaatatactgaagtaatatttggtaaaggtacaacatttaaagctggaacaata
ggtactatagctgaaaaaacagcttttgggtatgtgaagaaatattatgaggaaaaagag
atatcagtgaatagtgctgaaatagcaagaatttcaaaaggatgtacgggaataaaaaga
actacaggacaacatccaggaggcataatagttgtgccaaaaggaagagaaatttttgaa
ttctgtccagtacaacatccagctgatgatccagattcagatattattactactcatttt
gattatcattctatagaccaaaatttacttaagcttgatatattaggccatgatgatcct
acagtaataagaatgcttcaagatataaccggtgttgaccctaaaacaatacctttagat
gataaagaaacaatgtcgttattttcttcgacagaagcactaggattaaaacctgaacaa
ataaattcagaagttggtacatttggaataccagaattcggcactaagttcgtaagagga
atgcttttagatacattaccaacaacttttgcagatttgttatgtatatcaggactttca
catggtacagatgtttggcttggaaatgctaaggatcttattgatgcaggaactgttaca
ttaagtgaagcggtatgtactagagatgatattatgatttatttaattaaaaagggattg
ccaccaaatacagcatttaaaataatggaacttgttcgtaaaggaaaggccttaaaggac
cctgaaaaatggatggaatatgaaacattaatgagagagcatgatgttccagagtggtat
atagattcttgtagaaagataaagtacatgtttccaaaggctcatgcggcggcctatgta
atgatggcctttagaattgcttggtttaaggttcatatacctaaagcttactatgcagca
tatttttcaattagggctaaggcttttgatgcagaattcatgatatttggaaaagaaaaa
gttaaagctaaaatgaaggaaattaatatgcaaggtaatagtgcagctccaaaagataaa
gatatgtatgatgatctagaaatagttttagaaatgtatgaaagaggatttaaattctta
cctattgatttatataaatctgatgccacaaagtttaaagtagaagatgatggattaagg
ccacctataaatagtatatctggtatgggtaatgttgctgctgaagcaataataaatgcc
attcatatggagccgccaattagttctatagataatttaaagaaacgtggtaaaattgga
aatgctgctatagaattattaagaaaatttggttgtttgaatgatcttcctgaaagtgat
caagttagcttttttgatatagtttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (25)   

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