KEGG   Clavispora lusitaniae ATCC 42720: CLUG_03629
Entry
CLUG_03629        CDS       T01149                                 
Name
(RefSeq) similar to DNA-dependent RNA polymerase II second largest subunit
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
clu  Clavispora lusitaniae ATCC 42720
Pathway
clu03020  RNA polymerase
clu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:clu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CLUG_03629
  09124 Replication and repair
   03420 Nucleotide excision repair
    CLUG_03629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:clu03021]
    CLUG_03629
   03400 DNA repair and recombination proteins [BR:clu03400]
    CLUG_03629
Enzymes [BR:clu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CLUG_03629
Transcription machinery [BR:clu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CLUG_03629
DNA repair and recombination proteins [BR:clu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CLUG_03629
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 MRNIP
Other DBs
NCBI-GeneID: 8496938
NCBI-ProteinID: XP_002616388
UniProt: C4Y645
AA seq 858 aa
MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVENDK
EFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRTNT
PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYFLEE
WGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSIIRDIR
EREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYDEESQANAYT
WSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQELDPAKRIKP
TYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRM
DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRG
LFRSLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGED
IIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMR
TTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIEC
LLSKVSSLSGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGP
TYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKE
RLMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMA
MNISPRLYTERSGISVRV
NT seq 2577 nt   +upstreamnt  +downstreamnt
atggtcaacagattattgttatgtgcgttggagagaaaagaaccagatgacagagatcat
tttggtaagaaaagattagacttggccggcccattgttggcaagtttgttccgtctctta
tttaagaagttgacaagagatatttataactacatgcaaagatgtgttgaaaatgacaag
gaatttaaccttacgttggctgtcaagtcgcagactattactgacggcttgcgttactcc
ttggctactggtaactggggtgaacaaaagaaggccatgagtgctcgtgccggtgtctct
caagttttaaatcgttatacctattcctctaccttgtcgcacttgagaagaactaacact
ccgatcgggcgtgatggtaaaattgccaaacctagacagttacataacactcattggggc
cttgtctgtcctgctgaaacgcccgagggtcaagcgtgtggtcttgtgaagaacttgtca
ttgatgtcctgcatttctgttggtaccgcctctgaaccgattttatacttcttggaagaa
tggggaatggaacctttggaagattatgttccatctaactctcctgactgtacaagggtg
tttgttaatggtgtttgggttggtactcatagagaacccgcacaactagttgataccatg
agaagattgagaagaaaaggagatatttcacctgaagtatcgattatcagagacatcaga
gaaagagaattcaaaatctttactgacgctggtcgtgtttatcgtccattatttatcgtt
gatgatgacccagaatccgagacaaagggcgatttagtgttacagaaagagcacattcac
aagttgattaactctgaatatgatgaatatgatgaagaatctcaggcgaatgcttacact
tggtcttctttagttaatgacggtgttgtggagtatgttgatgcagaggaggaagaaacg
attatgattgctatgaccccagatgatttggaagcctcaaaaagttctttatctgaaact
caacagaagagcttacaattggaggagcaagagcttgaccctgccaagagaatcaaacct
acttatacttcatcaactcacactttcactcactgtgagattcacccatcgatgattttg
ggtgttgctgcatctattattccattcccagaccacaatcaatctccacgtaacacatac
cagtctgctatgggtaagcaagctatgggtgtctttttgacgaactactctgtcagaatg
gacacgatggccaacattttgtactaccctcaaaaaccattggcaaccactagatccatg
gaatatttgaaattccgtgaattaccagccggtcagaatgctattgttgctattgcatgt
tactccggttacaatcaagaagattccatgattatgaatcaatcttctattgacagaggt
ttgttcagatctttgttctttagatcgtacatggacttggaaaagaggcaaggtatgaag
gcattagaaactttcgaaaagccttccaggtctgacacattaaggttgaaacatggtact
tatgagaagttggatgacgatggcttgattgcgcccggagtccgtgtgagtggagaggat
atcatcattggtaaaactacaccaattccgcctgacactgaggaattaggtcagagaact
caataccacactaagagagatgcatctactcctttgagaagtacagagtcgggtattgtt
gatcaggtcttgttgaccactaatggtgatggtgcaaaattcgttaaggtgagaatgaga
acgacgaaaatcccccaaattggtgataagtttgcctccagacacggtcagaagggtact
attggtgttacttatagacacgaagacatgcctttcagtgcccaaggtattgtccctgat
ttgatcatcaatcctcatgccattccatctcgtatgacagttgcacacttaattgagtgt
ttattatctaaagtctcctccttgtcgggattggaaggtgatgcatcgccatttactgat
gttacggctgaggctgtgtcgaagttgttaagagaacacggatatcagtctagagggttt
gaggttatgtacaatggtcacacgggtaagaagttgatggcccaagtgtttttcggtcca
acttactaccaaagattgagacatatggtggatgataagattcatgccagagctagaggt
cctgttcaggtgttgacaagacaacctgttgaaggtagatctagagatggtggtttacgt
ttcggtgagatggaaagagattgtatgattgctcacggtgcggccggtttcttgaaggaa
agattgatggaagcatcagatgcctttagagttcatgtttgcggaatctgtggtttgatg
tctgtgattgctaacttgaagaagaaccagttcgagtgtagatcgtgcaagaacaagact
aatatctaccagattcacattccttatgctgccaaattgttattccaagaattgatggca
atgaacatttcgccaagattatacacggaaagatcaggaattagtgtccgtgtctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system