KEGG   Columba livia (rock pigeon): 102089034
Entry
102089034         CDS       T02912                                 
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
  KO
K14328  regulator of nonsense transcripts 3
Organism
clv  Columba livia (rock pigeon)
Pathway
clv03013  Nucleocytoplasmic transport
clv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:clv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102089034 (UPF3A)
   03015 mRNA surveillance pathway
    102089034 (UPF3A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:clv03019]
    102089034 (UPF3A)
Messenger RNA biogenesis [BR:clv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     102089034 (UPF3A)
   mRNA cycle factors
    P-body specific factors
     102089034 (UPF3A)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 102089034
NCBI-ProteinID: XP_021143543
Position
Unknown
AA seq 426 aa
MSKKVVIRRLPPCLTKEQLEEQLHPLPAHDYFEFCTADPSLYPHLYSRAYINFRNPEDIL
LFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDTKAGSIEDDPEYRKFLESYC
ADEEKICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELE
KKRLREEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELANEKQKEKGEDD
DIEENKWDKSPGSGSIKSKSLEGSLKELKERSQNDSDKEQRDLERRFREKEPERQRYRLD
DGRKHRAHYEFDKFVRRNEEELKWGKGCNQDRGKKGNYNYSFTVEAVDKLGKEDKCDDMA
SKKERIRNKDRPAMQLYQPGARIRTHTGSTSKTYDCCGKSFEDALDKKYEADNAAGGASE
KSEEAE
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgtccaagaaggtagttattcgacggcttcctccttgtctaactaaggagcaactggag
gaacagctacatcctctacctgcccatgattattttgagttttgcactgctgatcccagc
ctttatcctcatctctactcaagagcatacattaactttagaaatcctgaggacatcctt
ctttttagagatcgctttgatggctatgtcttcattgataataaaggtttggagtatcct
gcagtggttgaatttgcaccgttccagaagatttcaaaaaagaagctgaagaaaaaagat
accaaagctgggagcattgaagatgatccagaatataggaaatttttagagagttattgt
gctgatgaagagaaaatctgtgccaatcctgagattcttttgggagagattgaggccaaa
acaagggaactcattgctagaagaacaacaccccttttggaatatattaaaaatagaaaa
ttagaaaagcagagaatacgagaagagaaaagagaagaacgaaggcggagagaattggag
aagaaacgtctgcgggaagaagagaaaaggaagcgcagggaagaagaaagacgtaaaaga
aaagaagtggagaagcaaaagaagatttctgaaaaagaaataagaatcaagcttctcaag
aagcctgaaaaaggagatgaactggccaatgaaaaacagaaagaaaaaggtgaagatgac
gacattgaagaaaacaagtgggataaatcacctggatctggcagtataaaatctaaatca
ttggaaggttcactaaaagaacttaaggaaaggtcacaaaatgacagtgacaaagaacaa
agagatttggagagaagatttcgagaaaaagaacctgaaagacaaaggtaccgactggat
gatggcagaaagcatagagctcactatgagtttgacaagtttgtgagaaggaatgaagaa
gagctgaagtgggggaaaggatgcaaccaagacagaggaaagaaagggaactacaactac
agcttcactgtggaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggca
tccaaaaaggagcgcataagaaataaggatcggccagcgatgcagttgtaccagccagga
gctcgcattcgaacccacacgggatctacaagtaaaacgtatgattgctgcgggaaatcc
tttgaagatgctcttgataaaaagtatgaggcggacaatgcagctggaggtgcttctgag
aagagcgaagaagcagagtaa

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