KEGG   Chlorobaculum limnaeum: BIU88_01775
Entry
BIU88_01775       CDS       T04492                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
clz  Chlorobaculum limnaeum
Pathway
clz03410  Base excision repair
clz03430  Mismatch repair
clz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:clz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BIU88_01775
   03430 Mismatch repair
    BIU88_01775
   03440 Homologous recombination
    BIU88_01775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:clz03400]
    BIU88_01775
DNA repair and recombination proteins [BR:clz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BIU88_01775
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BIU88_01775
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BIU88_01775
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 DUF6638
Other DBs
NCBI-ProteinID: AOS82984
UniProt: A0A1D8D3Y6
Position
398673..400400
AA seq 575 aa
MKRYRWTRLEPEPTLVLALSEAINVSSPIAASLVNRGISSFEEARRFFRPSLDEIPSPFL
FNDMKRAVARLSKAIAGGEKIMVYGDYDVDGTSGTAMLSLFLAELGGDVCHYINDRFTEG
YGLSESGIAWAAEQGVSLIVTVDCGIRAIEEVKACAARGIDVIICDHHEAGELPEALAIL
NPKVEGCGYPFRELCGCGVALKLIQAMVEARGDDAARWRQYLDFVAVATAADMVSLQGEN
RVYLREGLALIRKSPRVSFRAMAANMKVELADFSMMNITYGIAPRINAAGRMESAGAAMQ
WLLSADEAEAHRHAAELEELNVRRREIDAEITSRAETMVAGHCASFCSSIVLYDEAWHLG
VLGIVASKLIDKYLLPTVVMGRMNGLIKGSVRSVDQLNIYDVLHECRDHLEQFGGHHQAA
GLTLRPENLEAFRRRFDEVCRELLPVEARQKALLIDADLTLDEITPNFLKVLEQFSPFGF
ANREPLFVATGCRLVGKPKLLRERHVKFTVRGERSSSFEVIAFDRPDIFTDLEACKASPV
LHLVCIPERNQWNGREYVQLRLKDLAVGGELGPAE
NT seq 1728 nt   +upstreamnt  +downstreamnt
atgaaacgataccgatggacgcgcctcgaacccgaaccaacgctggttttggcactttcc
gaagcgattaacgtcagctcgcccattgccgcctcgctcgtcaatcgcggcatttcgagc
ttcgaggaggcccgccggttctttcgtccttcgctcgacgagattccgtcgccattcctc
ttcaatgacatgaaacgcgccgtcgcgcggctctcgaaggcgattgccggtggcgaaaaa
atcatggtctatggcgattacgatgtcgatggcacctccggcacggcgatgctgtcactg
tttctcgctgaactggggggggatgtgtgtcactacatcaacgaccgcttcaccgagggc
tacgggctttcggagagcggcatcgcctgggcggctgagcagggggtgtcgctcatcgtc
acggtcgattgcggtatccgcgccatcgaggaggtgaaggcgtgcgccgccagggggatc
gatgtcatcatctgcgaccaccacgaggcgggcgagttgccggaggcgctggcgattctc
aatccgaaggtggaggggtgcggctatccgtttcgcgagctttgcggctgcggcgtggcg
ctcaagctcatccaggcgatggtcgaagcgcggggcgacgacgcggctcgctggcggcaa
tacctcgacttcgttgccgtggcgaccgccgccgacatggtgtcgctgcagggagagaat
cgcgtctatctgcgtgaaggcctcgcgctgattcgcaaatcgcccagagtgagtttccgg
gcgatggccgcgaacatgaaggtcgagctggctgacttcagcatgatgaacatcacctac
ggtattgcgccccgcatcaacgccgccgggcggatggagtcggcgggcgcggcgatgcag
tggctcttgagtgcggacgaggcggaggcgcaccgtcacgcggcggagctggaggagctg
aatgtgcggcggcgggagatcgatgcggaaattacgtcacgcgccgaaacgatggtggcg
ggccactgcgcaagcttctgctcctcgatcgtgctctatgacgaagcgtggcacctcggc
gtgcttggcatcgtggcctcgaagcttatcgacaaatatctgttgcctaccgtcgtgatg
gggcggatgaacggcctcatcaaggggtcggtcaggagtgtcgatcagctcaacatctac
gacgtgctccacgaatgccgcgaccatctcgaacagttcggtggccaccaccaggcggcg
gggttgacgctcaggccggagaatctcgaagcgttccgccgccgattcgacgaggtgtgc
cgcgagttgctgccggtcgaagctcgccagaaggcgctcctgatcgacgctgacctcacg
ctcgacgagatcacgccgaactttctgaaggtgctcgaacagttctcacccttcggtttc
gccaaccgtgagccgctcttcgtagccaccggatgccgtctggttggcaagcccaaactg
ctgcgggagcggcacgtcaagttcacggtgcggggggaacgcagctcgtcattcgaagtg
atcgccttcgaccgccccgacatcttcaccgacctcgaagcctgcaaagcctctccggtg
ctgcacctcgtctgtattcccgaaagaaatcaatggaacggccgcgaatacgtgcagcta
agattgaaggatttggcggtggggggagaattagggcctgctgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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