KEGG   Chlorobaculum limnaeum: BIU88_12765
Entry
BIU88_12765       CDS       T04492                                 
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
clz  Chlorobaculum limnaeum
Brite
KEGG Orthology (KO) [BR:clz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:clz03009]
    BIU88_12765
Enzymes [BR:clz01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     BIU88_12765
Ribosome biogenesis [BR:clz03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    BIU88_12765
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 TRAM UPF0020 MTS RrnaAD Cons_hypoth95 Methyltransf_15 Methyltransf_11 N6_N4_Mtase Met_10 DOT1 PrmA PCMT Methyltransf_4 Methyltransf_12
Other DBs
NCBI-ProteinID: AOS84924
UniProt: A0A1D8D7U5
Position
complement(2789347..2790786)
AA seq 479 aa
MEQQEIRYRKGDTIELIITDHAEKDKCFGKTAEGMGVMVSGILAPGDRVSAQVYKVKQRY
LEARAIEVLEASPDRVEPVCPVFGSCGGCKWMHVSYEAQLRYKYKKVTDSLAHIGGFENP
EVLPVLAAPDALHYRNKVEFSCSNMRYLLQAEIDSDALAKPKSFALGFHAPGNFEKVLDL
DTCYLAKECMNTVLNVVRDFALERGLAPYAAKAHEGYLRNLALRYSERYDQLMVNIVTSW
HDAALMQALKERLEAALPEQRMTIVNNVTTRRNTVATGEQEYVISGEGYVTERLGDLDFR
ISANSFFQTNTRQAETLYDQIIAVGGITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVV
ESAVRDAQMNAELNGLSNTVFFQADLKNFHAMQEALAPYAKPRIIVTDPPRAGMHPKALD
TMLKLQPERIVYVSCNPDNLARDGKEIAARGYRMSSAQPVDMFPQTNHIETVACFERVE
NT seq 1440 nt   +upstreamnt  +downstreamnt
ttggaacaacaggaaatccgctacagaaaaggcgacactatcgaacttatcatcaccgac
cacgccgagaaggacaaatgcttcggcaaaaccgccgaggggatgggcgtgatggtctcc
ggcatcctcgcgccgggtgaccgcgtttcggcgcaggtttacaaggtcaagcagcgctat
ctcgaagcgcgcgccatcgaggtgctcgaagcgtcgccggatcgcgtcgagccggtctgc
ccggttttcggctcctgcggcggatgcaagtggatgcacgtcagctacgaggcgcagctt
cgctacaagtacaaaaaggtgacggactcgctcgcgcatatcggcggcttcgagaacccg
gaggtgttgccggtgctggccgcgcccgacgcgctgcactaccgcaacaaggtggagttc
tcctgctcgaacatgcgctacctgctccaggcggagatcgacagcgacgcactcgccaag
cccaaaagcttcgccctcggcttccacgcgccgggcaacttcgaaaaggtgctcgacctc
gacacctgctacctcgccaaggagtgcatgaacaccgtgctgaacgtcgtgcgcgacttc
gccctcgaacgcggcctcgcgccgtatgccgccaaggcgcacgaaggctacctgcgcaac
ctcgcgctccgctacagcgagcggtacgatcagctcatggtcaacatcgtcacctcgtgg
catgacgcggcgctgatgcaggcgttgaaagagcggctcgaagcggctttgccggagcag
cggatgaccatcgtcaacaacgtcaccacccgccggaacacggtggccaccggcgagcag
gagtacgtcatcagcggcgaaggatacgtcaccgaacgcctcggcgacctcgacttccgg
atttccgccaactccttcttccagaccaacacccgccaggccgaaacgctctacgaccag
atcatcgccgtcggcggcatcacgccggaagacacggtttacgacctctactgcggcacc
ggcaccatcacgctctacctcgcccgccactgcaagcaggcgatcggcatcgaggtggtt
gaaagcgccgtccgcgacgcgcagatgaacgccgaactgaacggcctctcgaacacggta
tttttccaggccgacctcaagaacttccacgccatgcaggaggcgctcgccccctacgcc
aaaccgcgcatcatcgtcaccgaccccccgcgcgccggaatgcaccccaaagcgctcgac
accatgctcaagctccagcccgagcgcatcgtctacgtgagctgcaaccccgacaacctc
gcccgcgacggcaaagagatcgccgcccgaggctaccgaatgagttccgcccagccggtt
gacatgttcccgcagaccaaccacatcgagacggtagcgtgtttcgagcgggtggagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (17)   
   Pfam (17)   
All databases (26)   

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