KEGG   Pacificitalea manganoxidans: CBW24_13685
Entry
CBW24_13685       CDS       T05128                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cmag  Pacificitalea manganoxidans
Pathway
cmag03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmag00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBW24_13685
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmag03021]
    CBW24_13685
   03400 DNA repair and recombination proteins [BR:cmag03400]
    CBW24_13685
Enzymes [BR:cmag01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CBW24_13685
Transcription machinery [BR:cmag03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CBW24_13685
DNA repair and recombination proteins [BR:cmag03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CBW24_13685
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid
Other DBs
NCBI-ProteinID: ATI42951
UniProt: A0A291M1V9
Position
complement(2985449..2989690)
AA seq 1413 aa
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFMDAQDAYGMDAFT
ANIGAEAIREMLAQIDLEAEAEQLRADLSEATGELKPKKIIKRLKIVESFLESGNRPEWM
VLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYITMQREGMKGEGMIFGSIEEIEHAL
NAGEVHLHAKIQARLKQIDDEGNEVMRRFETTPGRARLGGLLPLNTKAPFDLVNRLLRKK
EVQQVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDTKWTIVDETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMTTISSKKYDENGAEHEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRQHDCGTELAVTAEPAVNDGEVVASLAERILGRV
AAEDVLAPGTDEVLVAKGELIDERKADQIEAGGVASMRIRSPLTCEAEEGVCAMCYGRDL
ARGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQSGKIEFRNAQ
ILENEAGEQIAMGRNMQLAILDEHGEERASHKISYGTKVFVRDGADVTRGDKLFEWDPYT
LPIIAEKGGIAKYVDLVSGIAVRDETDDATGMTQKIVTDWRAAPKGNDLKPEIIVMDPET
GEPMRNDAGNPVSYPMSVDAVLSVEEGQVVKAGDVVARIPREGAKTKDITGGLPRVAELF
EARRPKDHAIIAEADGYVKFGRDYKNKRRITIEPADDTMEAVEYMVPKGKHIPVQEGDFV
QKGDYIMDGNPAPHDILSIMGVEALAEYMINEVQDVYRLQGVKINDKHIEVIVRQMLQKW
EILDSGETTLLKGEHVDKAEFDAANEKALKRGKRPAQGEPILLGITKASLQTRSFISAAS
FQETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQKVRAIATARDQKVVDARQ
AEAEAAAALAAPAEDVSAGTEEDFLVETPESRE
NT seq 4242 nt   +upstreamnt  +downstreamnt
atgaaccaggaaatcaccaacaacccgttcaaccccctgaccccgccgaaagtcttcgac
gagatcaaggtgtccctggcgtcgccggaacggatcctcagctggtcctatggtgaaatc
aagaagcccgagaccatcaactaccggaccttcaagccggagcgcgatggtctgttctgt
gcccggatctttggcccgatcaaagactacgaatgcctttgcggtaagtataagcgcatg
aagtatcgcggcgtcgtctgcgagaaatgtggcgtcgaagttaccctgcagaaagtgcgc
cgcgagcgtatgggccatatcgaactggccgcgcccgttgctcacatctggttcctgaag
tcgcttccgagccggatcggcctcatgctcgacatgacgctgcgcgatctggagcggatc
ctctacttcgagaactatgtcgtcattgagccgggcctgacggatctcacctacggtcag
ctgatgaccgaagaagagttcatggacgcgcaggacgcctatggcatggacgcgttcacc
gccaatatcggtgccgaagcaatccgcgaaatgctcgcccagatcgatctggaggccgag
gccgaacagctgcgcgccgatctgtcggaagccactggtgagctgaagcccaagaagatc
atcaagcgtctgaagatcgttgaaagcttcctcgaatccggcaaccgtccggaatggatg
gtcctgaccgtaatccccgtgatcccgcccgagctgcgcccgctggtgccgctggacggt
ggtcgctttgcgacgtccgatctgaacgatctatatcgccgggtcatcaaccggaacaac
cgtctgaagcggctgatcgagctgcgcgcgccggacatcatcattcgcaacgaaaagcgg
atgttgcaggaatccgtcgacgcgctctttgacaacggtcgtcgtggccgggtcatcacc
ggtgccaacaagcgtccgctgaaatcgctcagcgacatgctgaagggtaagcagggtcgc
ttccgtcagaaccttttgggtaagcgcgtcgacttctccggtcgttcggtcatcgtgacc
ggccccgaattgaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttc
aagccgttcatctattcacggctggaggccaagggtctcagctcgacggtgaaacaggcc
aagaaactggtcgagaaagagcgccccgaggtgtgggatatcctcgacgaggtgatccgc
gagcacccggttctgctgaaccgtgcgccgaccctgcaccgtctgggcattcaggccttc
gaacccacgctggtcgaaggtaaggccatccagctgcacccgctcgtctgctcggcgttc
aacgctgacttcgacggtgaccagatggctgtgcacgtcccgctgagccttgaggcccag
ctggaagcgcgcgtcttgatgatgtcgacgaacaacgttctgtcgcccgccaacggcgcg
ccgatcatcgttccgtcgcaggatatgatcttgggtctctactacatcaccatgcagcgc
gaaggcatgaagggtgaaggcatgatcttcggctcgatcgaagagatcgagcatgccctg
aacgccggcgaggtgcatctgcacgccaagatccaagcacggctgaagcagatcgacgat
gagggcaacgaagtgatgcgtcgcttcgagaccacgccgggccgtgcgcgcctgggcggt
ctgctgccgctcaacaccaaggcacccttcgatctggtgaaccgtcttctgcggaagaag
gaagtgcagcaggtcatcgacaccgtctaccgttactgcggtcagaaagagtcggtcatc
ttctgcgatcagatcatgtcgatgggcttcaaagaagcgttcaaggcgggcatctcgttc
ggcaaggacgacatggtcattcccgacaccaaatggacgatcgtcgatgaaacgcgcgat
caggtgaaggactttgaacagcagtacatggacggcctgatcacccagggcgagaagtac
aacaaagtcgtggatgcctggtcgaagtgtaacgacaaggtcaccgaagcgatgatgacc
actatttcgtcgaagaaatacgacgagaatggcgcggagcatgaaccgaactcggtctac
atgatggcccactccggtgcccgtggctcggtcacccagatgaaacagctgggcggcatg
cgcggcttgatggccaagccgtccggtgagatcatcgaaacgccgatcatctcgaacttc
aaagaaggtctgaccgtgttggagtacttcaactccacccacggcgcccgtaagggtctg
tcggataccgctctgaagaccgccaactccggctacctgacccgtcgtctcgtcgacgtg
gcgcaggactgcatcgtgcgtcagcacgactgtggcaccgaactggccgtgaccgccgag
cctgccgtcaatgacggcgaagtcgtcgcctcgcttgccgagcgaattctgggtcgcgtc
gcggccgaggatgttctggcaccgggcaccgacgaggttctggtcgccaagggcgagctg
atcgacgaacgcaaggcggatcagatcgaggccggtggcgtcgcatccatgcgcattcgt
tcgccgctgacctgtgaggccgaagagggcgtctgcgccatgtgctatggtcgtgacctt
gcacgcggcacgctggtcaaccagggcgaggctgtcggtatcatcgcggcccagtccatc
ggtgagccgggcacccagctgacgatgcggaccttccacatcggcggtgttgcacagggt
ggtcaacagtccttcctcgaagcgtcgcagtccggcaaaatcgagttccgcaacgcccaa
atcctcgaaaacgaggcgggtgagcagatcgcgatgggccggaacatgcagctggccatc
ctcgatgagcatggcgaggagcgcgcgagccacaagatctcctacgggacgaaggtgttc
gtccgggacggggccgatgtgacgcgcggcgacaaactgttcgaatgggatccctatacc
ctgccgatcatcgccgagaagggcggtatcgcaaagtatgtcgacctcgtgtccggtatt
gccgtgcgcgacgagaccgacgatgcgaccggcatgacccagaagatcgtcaccgattgg
cgcgcggcgccgaaaggcaacgatctgaagcccgaaatcatcgtcatggaccccgaaacc
ggtgagcccatgcgcaacgatgcgggcaacccggtgtcctacccgatgtccgtcgatgcg
gttctgtcggtcgaagaaggtcaggtcgtgaaggccggtgacgtcgttgcgcgtatcccg
cgtgaaggcgccaagaccaaggacattaccggtggtctgccgcgtgtggccgaactgttc
gaagcgcgtcgtccgaaggatcacgccatcatcgccgaggcggatggctatgtgaaattc
ggtcgcgactacaagaacaagcgccgcatcacgatcgagcctgcggacgataccatggag
gccgtggaatacatggtccccaagggcaagcacatcccggtgcaggaaggcgacttcgtg
cagaagggcgactacatcatggacggcaacccggcgccgcatgacatcctgtcgatcatg
ggtgtcgaggctctggccgagtacatgatcaacgaagtgcaggacgtctatcgactgcag
ggcgtgaagatcaatgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgg
gagatcttggattcgggcgagaccacgctgctcaagggcgagcatgtggacaaggccgag
ttcgacgccgccaacgagaaggcgctcaagcgtggcaagcgtccggcacagggcgagccg
atccttctggggatcaccaaggcttcgcttcagacccggtcgttcatctctgccgcgtcc
ttccaggaaaccacgcgcgtgctcaccgaggcttcggtgcagggcaagcgggacaagctg
gttggtctgaaggagaacgtgatcgtgggccgtctgatccccgctgggaccggcggtgcg
acccagaaggtgcgcgccatcgcgaccgcccgcgatcagaaggtcgtggatgcgcgtcag
gcggaggccgaagccgccgccgcgctggcggcacctgccgaggacgtctcggccgggacc
gaagaggacttcctcgtcgagaccccggaaagccgcgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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