KEGG   Croceicoccus marinus: A9D14_12125
Entry
A9D14_12125       CDS       T04890                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cman  Croceicoccus marinus
Pathway
cman02020  Two-component system
cman02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cman00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A9D14_12125
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    A9D14_12125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cman03021]
    A9D14_12125
Transcription machinery [BR:cman03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A9D14_12125
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_39 HTH_15 HTH_21 HTH_IclR HTH_Crp_2
Other DBs
NCBI-ProteinID: ARU16781
UniProt: A0A1Z1FD72
Position
2547921..2549387
AA seq 488 aa
MTLAPRLDLRQSQSLVMTPQLKQAIGLLQLSNLELEAVLMDAASANPLLRVSGQEGEKEA
KADPKAEEPAEAGSADGESALDISAELIDRDRDTGDFPDFGSTGGGFDGEFGNDFAPGGG
PTLSEHLHDQLCMAHGTPVQLFIARQIIGRLDEAGYLTVPLEELANDLGVSVDDAEAALR
MVQSLEPTGVGARDLAECISLQLAERDRLDPCISLMLNNLDLLARGNLAQLKRMCRASDE
DIAEMIADIRSCDPRPGHVFGVEPPPPVVPDVLVRADGVAGWLVSLNRENLPRLVVDRAY
HARVSPSCRDKAASSWLGEQLADANRLVRALDQRQRTILTVAREIVKRQEGFFLRGVSAL
VPLTRREVAEATQLHESTVSRVTANKFLHCTRGCFELRFFFASGVSASGGGEQEGDQGAA
SAEAVKAAIRALIDAEPADGILSDDALVTELKKQGYEIARRTVAKYREAAGLGSSVQRRR
QKALARAG
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgaccctcgcgccccgcctcgatctgcgccagtcgcaatcgctggtgatgacgccgcag
ctgaagcaggcgatcggcctgctgcagctgtcgaacctggagcttgaggcggtgctgatg
gatgcggcgtcggccaatccgctgctgcgcgtttcagggcaggagggcgagaaggaagcc
aaggccgaccccaaggcggaggagcctgcggaagcgggatcggcggacggcgaaagcgcg
ctcgacatttcggcagagctgatcgaccgcgaccgcgacaccggcgactttccggatttc
ggctcgaccggcggcggtttcgatggcgagttcggtaatgatttcgcgcccggcggcggg
ccgaccctgtccgaacatctgcacgaccagctttgcatggcgcatggcacgccggtgcag
ctattcatcgcgcgccagatcatcgggcggctggacgaggcgggctatctgaccgtcccg
ctcgaggagctggccaacgacctgggcgtgtcggtggatgacgcggaagcggcgctgcgc
atggtccagtcgctggagccgacaggggtaggcgcgcgcgacctggccgaatgcatttcg
ctgcaactggcggagcgggaccggctggatccctgcatcagcctgatgctgaacaatctg
gacctgctggcacggggaaacctggcgcagctgaagcgcatgtgccgcgcgagcgacgag
gatatcgccgagatgatcgccgatatccgcagctgcgatccccgtccggggcatgtcttc
ggcgtcgagcccccgcctccggtcgtgcccgacgtgctggtgcgcgccgatggcgtggcg
ggctggctggtgtcgctcaatcgcgagaacctgccccggctggtcgtcgaccgcgcctat
cacgcgcgggtcagcccttcgtgccgcgacaaggccgccagcagctggctgggcgagcag
cttgccgatgcgaaccggctggtacgcgcgctggatcagcggcagcgcacgatcctgacc
gtcgcgcgcgagatcgtgaagcggcaggagggcttcttcctgcgcggcgtgtcggccctt
gtgccgctgacccgccgcgaggtggccgaggcgacgcaattgcacgaatccaccgtcagc
cgcgtcaccgccaacaagttcctgcattgcacgcgcggctgcttcgaactgcgcttcttc
ttcgcctcgggcgtcagcgcctcgggcggcggagagcaggagggcgaccagggcgccgcc
tctgccgaggcggtgaaggccgcgatcagggcgctgatcgatgcggagcctgccgacggc
atattgtccgacgatgcgctggtcaccgaactgaagaagcagggctatgaaatcgcccgc
cgcaccgtcgccaaatatcgcgaggcggcggggctgggatcgtcggtccagcggcgccgt
cagaaggcccttgcccgcgcgggatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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