KEGG   Cucurbita maxima (winter squash): 111479352Help
Entry
111479352         CDS       T05246                                 

Definition
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13]
Organism
cmax  Cucurbita maxima (winter squash)
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cmax03041]
    111479352
   03009 Ribosome biogenesis [BR:cmax03009]
    111479352
Enzymes [BR:cmax01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     111479352
Spliceosome [BR:cmax03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    111479352
Ribosome biogenesis [BR:cmax03009]
 Eukaryotic type
  90S particles
   Helicases
    111479352
  Pre-60S particles
    111479352
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DEAD Helicase_C ResIII SNF2_N CMS1
Motif
Other DBs
NCBI-GeneID: 111479352
NCBI-ProteinID: XP_022979726
Position
Unknown
AA seq 649 aa AA seqDB search
MARAPIHTPANFLTSRSLEPCYLRRYGCLRPPFLSQTLRPVPASKLVIVRGCVIAGYARK
SVDSDGFDQLTDDNDFTVYSSHELPYDGDVTVDNEDIKNSGTPRRISIGRLGRLKSQKVK
AIVMKGSRTKEEVKDDVRVLTSGNGSPHISDRPHSKVKTPGEKKKVNTLRNVERFSRSSE
LQDKGRHHRTPPSLSRSEQSVPAASATHFRGWGSRGPYDSEYESTQPKQQKFSSEKGFYS
RKSFKDLGCTEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPL
IQRLRQEELQGLQKPSSQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQ
KTQLDNLQEGVDVLIATPGRLMLLINEGFLQLSNLRCAVMDEVDILFNDEDFEVALQTLM
KSAPVNAQYLFVTATLPVDIYNTLVEKFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQN
KTPDAAFLNKKDALLQIAEGTPVLKTIVFCNKIETCRRVENALQRFDKKGSRLQVFPFHA
ALARDSRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRV
GRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTY
NT seq 1950 nt NT seq  +upstreamnt  +downstreamnt
atggccagggctcccattcacactccggccaactttctgacctctcgaagtctcgaaccg
tgctacttgagacgctatggctgcctccgcccgccatttctgagccagacgctacggcca
gttcccgcaagcaagctggtgattgttcgtggttgtgtaatcgccggttacgctcgcaag
tcggtggattctgatggatttgatcagctcactgatgataatgacttcaccgtatattcc
tcgcacgaattgccttacgatggagatgtgacagttgataatgaagatattaagaattca
ggaacaccgagaaggatatcaattggaagacttggaagattgaaatctcagaaagttaag
gcaattgtgatgaaaggttctaggacaaaggaagaagtaaaagatgatgttcgtgtactg
acttctggaaatggttcaccgcatatatccgatcgtccgcactctaaagttaaaactccg
ggagaaaagaagaaggtaaataccttaagaaatgtagaaagattttcaagatcatctgaa
ctgcaagataaaggtcgacatcacagaactccccccagtttatcaagatccgagcaatcg
gtcccggcagcttctgccactcacttcagaggatggggctctagagggccctacgattca
gagtatgaatcaacccaacctaaacaacagaagttttcctcagagaagggcttttatagc
cgaaagtcatttaaagatcttgggtgcactgaatatatgattgagtcattgaggaggcag
aatttcctacggccttcacagattcaggccaaggcatttgcatcagttattgaaggaaaa
agttgtatcatttctgatcaaagtggatctggtaagacattagcatatcttgcaccatta
atccagcgtctgaggcaggaggaacttcaaggacttcaaaaaccttcttcacaaagtccc
caaattgttatcattgtgccgactgcagaattggcttctcaggtcttaagtaattgccga
tccatttcaaaatttggggtgccatttaggtcaatggttgtgacaggcggtttccggcag
aaaactcaacttgataatctacaagaaggtgttgatgttctaatagcaactcctggtcgt
ttgatgcttctaataaatgaaggcttcttgcagttatcaaatctaagatgtgctgtaatg
gacgaggtagatatcctctttaatgatgaggattttgaagttgcattgcagactttaatg
aagtctgcacctgttaacgcacaatatctatttgtgactgcaactttacccgttgacata
tataatacattagtagaaaagtttcctgattgtgaagtgatcatgggacctggagttcac
cggataagtcctagtctggaagaggttcttgtagattgtagtggtgaagatgagcagaac
aagacaccggacgctgctttcttgaataagaaagacgcccttctgcagattgctgaagga
actccagtcttgaaaactattgttttctgtaacaagattgagacatgtagaagagttgaa
aatgcattgcaacgttttgataaaaaaggcagccgcttgcaagtttttccatttcatgct
gccctagcaagagactcacggcttgcaaatatggaggccttcaccaattctcattcaaac
caagtatccaagttcttggtttgtacagatagggcatcacgtggaattgattttccaaat
gtggatcatgtcatactcttcgacttccctcgtgatcctagcgagtatgttcgccgtgtt
ggaagaacggctagaggtgctacaggaaaaggaaaagcattcatcttcgtggttggaaag
caggtatcgcttgcacggaggataatcgaaagaaacaggaaaggtcatccgttgcatgat
gtgccatctgcttatgagcttacatactaa

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