KEGG   Cucurbita maxima (winter squash): 111480376
Entry
111480376         CDS       T05246                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
cmax  Cucurbita maxima (winter squash)
Pathway
cmax03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:cmax00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111480376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cmax03036]
    111480376
Chromosome and associated proteins [BR:cmax03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111480376
  Chromatin remodeling factors
   NuRD complex
    111480376
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Chromo Helicase_C ResIII HDA2-3 PHD CHDCT2 PHD_4 DEAD Myb_DNA-binding SLIDE zf-HC5HC2H C1_2 C1_1
Other DBs
NCBI-GeneID: 111480376
NCBI-ProteinID: XP_022981141
UniProt: A0A6J1IVQ1
Position
Unknown
AA seq 1480 aa
MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDKKEDACQACGES
ENLLSCETCTYAYHPKCLVPPLKSPVPSNWRCPECVSPLSDIDKLLDCEMRPTLAEDSDA
TKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFIRAFKTHPRLKTKVNNFHKQMASNNNA
EEDYVAIRPEWTTVDRILACRENDEEKEYLVKYKELSYDECYWEFESDISAFQPEIDKFH
KIQSRSRKSYNKNKSIHGDVEVKKKQKEFQQYDCSPEFLSGGTLHPYQLEGLNFLRFSWS
KQTHVILADEMGLGKTIQSIAFLASLYEENLSPHLVVAPLSTLRNWEREFATWAPHMNVV
MYVGSAQARAVIREYEFFFPKNHKKVKKKKSGLIITESKQDRIKFDVLLTSYEMINFDVA
TLKPIRWQSLIIDEGHRLKNKDSKLFSSLKQFSSNHRVLLTGTPLQNNLDELFMLMHFLD
AGKFGSLEEFQEEFRDINQEEQILRLHKMLAPHLLRRVKKDVMKDLPPKKELILRVELSS
KQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHAYMLEGVEPDIDDAEEAYKQ
LLETSGKLHLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCCYKKWHYERIDGKVCGAE
RQIRIDRFNAKGSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG
QTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELF
ADENDEAGKSRQIHYDDAAIERLLDRDQIRDEEATMDDEEDDEFLKAFKVANFEYIDEVE
AAAEEAAKRASMESKPVASNLERASYWEELLKDKYEVHKVEEFNALGKGKRSRKQMVSVE
EDDLAGLEDVSSEGEDDNYEADLTDGEANSTGIPSVKKPYRRKSRVDSTEPLPLMEGEGR
AFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFNSRMKQKTYEEIKEYGTLFLSHIAEDIT
DSPNFSDGVPKEGLRIQDVLIRIAVILLIRDKAKFVPENPSAPLFTDDILSRYPGLKGGK
HWKEEHDRLLLLAVLKHGYGRWQAIIDDKDLKIQEVICLELNLPVINLPVPGQTGSLVQN
GGNTSNTEATGSESREKENGGGNDAASDVQGGGTDTANQSQLYQDSSIYYHFRDMQRRQV
EFVKKRVLLLEKGLNAEYQKEYFGDTKANEMTSEDIENESKVSNVPGPSSMETDTQKKDQ
LPQVEPISSEETSTACDDNSDRLELSRLYNEMCKVLDENCKELVHAPSGSHHAASDLKNN
LLPLEKIFEDVDRILSSQSNPINEQPMSVSDPQPVVVESPSTDFGLKPSLADPDSERDAV
VTEMEIDPAKDSESKKESDRLMPIDLDLIDEKPEPSARVEMAESSSRVPASDDPCPDQPD
STPLPEKRSVVDEMEVEVSKDIASPEYNEEGNPQVIVLDD
NT seq 4443 nt   +upstreamnt  +downstreamnt
atgagtagcctggttgagaggcttcgtgttagatcagaacggaggccagtgtataatctc
gatgagtcagatgacgactttgattataagcataaaaaacctggctcaacgcaggataaa
tttgaaaaactagagcgggaagacaagaaagaagatgcatgtcaagcttgtggagaaagt
gagaatcttctctcttgtgaaacctgtacatatgcttaccatcctaaatgtctagttcca
cccttgaaatcgcctgtccctagcaactggaggtgccctgaatgtgtaagccccctaagt
gatatcgataagttattggactgtgaaatgcgccctactcttgctgaagatagtgatgcg
acaaagctcggttcaaagcaaatttttgtgaaacaatacctcgtaaagtggaaggggtta
tcttatctacactgcacatgggtgcctgagaaagaatttattagagcttttaaaactcat
cctcgcttgaagactaaagtaaacaattttcataagcaaatggcatcaaacaacaatgcc
gaggaagattatgttgctattcgacctgaatggactacagtggaccggattcttgcttgc
agggaaaacgacgaagaaaaagagtatttggtgaaatataaagaactttcatatgatgaa
tgctattgggaatttgaatcggacatctctgcctttcagcccgaaatcgacaaattccat
aaaattcagtctagatcccgcaagtcttataataagaacaaaagcatccatggtgatgtt
gaagtaaagaaaaaacaaaaagaattccaacaatatgattgtagtcctgaatttctttct
ggaggaacattacatccatatcagctcgaagggttaaattttttgcgtttttcttggtcc
aagcaaactcatgtgatacttgctgatgagatggggctcggaaaaaccatacagagtatt
gcctttttagcatccctttatgaagagaatttatctcctcacttggtggttgctccatta
tcgacgcttcgaaattgggagcgtgaatttgctacatgggctccacatatgaatgttgtt
atgtatgtgggctctgcgcaagctcgtgcagttataagggaatatgaatttttctttcca
aagaatcataagaaagtgaagaaaaagaaatctggcctaattattactgaaagtaagcaa
gatagaatcaagtttgatgttctgctaacgtcatatgagatgattaactttgatgtggca
acactgaagcctataagatggcaatccttgattattgatgaaggccatcgacttaagaac
aaggattcaaaattattttcttcattgaaacaattttcaagtaaccatcgagtactcttg
actggaactcctcttcagaataatctcgatgaacttttcatgctgatgcacttccttgac
gctgggaagtttggaagtcttgaggagtttcaagaggagttcagagatatcaatcaagag
gagcaaatcctgaggctacacaaaatgttagctcctcatctcctgagaagggtcaagaaa
gatgtcatgaaggacctaccccctaaaaaagaacttattttgcgtgttgaattaagcagt
aagcagaaagaatattacaaagccattttaacccgaaactatcaaatattaactcgccgt
ggtggtgcacagatttctcttatcaatgtcgttatggaattgcggaagctttgttgtcat
gcttacatgttagaaggagttgaaccagatatagatgatgctgaagaagcgtataaacag
cttttggaaacttccgggaagttgcatttgctagataagatgatggtgagacttaaagaa
caaggtcatagagttctcatatattcacaatttcaacacatgttggacttgctagaagac
tattgctgttacaagaaatggcactatgaaagaattgatggcaaggtttgtggagctgaa
agacaaattcgaatagatcgattcaatgccaagggttcctccagattttgtttcctgctt
tctactcgagctgggggtctgggaataaatcttgcaactgctgacaccgttatcatatat
gacagtgattggaatccccatgctgatctacaggctatggctagagctcaccgacttggg
caaactaacaaggtaatgatttatcggttagtaacacgagggaccattgaagaaaggatg
atgcaaatgacaaagaagaagatggtcttagagcatttggtcgtcggaaggctgaaggct
cagaatatcaatcaggaagagctagatgatattataaggtatggctcaaaggaattattt
gctgacgagaatgatgaggcagggaaatctcgtcaaattcattatgatgatgctgcgata
gaaagattgctggatcgtgatcaaattagagacgaagaagcaaccatggatgatgaagag
gatgatgaatttctgaaggcctttaaggtggcaaattttgagtatatcgatgaggtagaa
gctgcagcagaagaggcagccaaaagggcatccatggaaagtaagcctgttgcaagcaac
ctggaaagagctagctattgggaagagttgttaaaggacaaatatgaagtgcataaggta
gaagagtttaatgctttgggtaaaggaaagaggagccggaaacagatggtatctgttgaa
gaagatgacctcgctggactagaagatgtaagctccgagggtgaggatgataactatgaa
gctgatttaactgatggcgaagcaaattcaactggtattccttcggtgaaaaagccttat
cggaggaaatctcgcgtggatagcactgagccacttcccttaatggaaggggaaggaaga
gcattcagagttcttggtttcaaccaaaatcaaagggctgcatttgtgcaaattttaatg
aggtttggcgttggggactttgactggaaggagtttaattctcgtatgaagcagaagact
tatgaagagataaaggaatatgggactcttttcttatctcacattgctgaagatatcact
gactcccccaacttttcggatggtgttcctaaagaaggactcagaatacaagatgtgctg
atcagaattgcagttatactcttgataagggataaagcaaaatttgtcccagaaaatccg
agtgctccacttttcacagatgacattttatctcgttaccccggacttaaaggtggaaaa
cattggaaggaagaacatgatagattgttgctacttgctgttctgaagcatggctacggt
agatggcaagcgattattgacgataaggacctcaagattcaagaggtgatttgtctggag
ttgaatcttcctgtcattaacctacctgttcccggacaaaccggttcgcttgttcagaat
ggtggaaacacatcaaatactgaagcaactggtagcgagtccagagaaaaggaaaacggc
ggtggaaacgatgctgcctctgatgtgcagggaggaggaactgatactgctaaccaatcc
cagttatatcaagattcgtctatatattatcattttagagatatgcagagacgacaggtt
gaattcgtcaagaaaagggtgctcctcttggaaaaagggctgaatgcagagtaccagaaa
gaatactttggcgatacgaaggcaaatgaaatgacaagtgaagatattgagaatgaatcc
aaggtttcgaatgtgccaggtcctagctctatggagactgatactcaaaagaaggaccag
ttgcctcaagtagaaccaatttcttcagaagaaacttctactgcttgtgatgacaattct
gatagattagaattaagtcggctttacaatgagatgtgcaaggttttggatgaaaattgc
aaagagctggtccatgcaccctctgggagccaccatgcagcttctgacttgaaaaataac
ctccttcccttggagaagatttttgaagacgtggaccgaattctttcttcacagtcaaac
cccattaacgaacaaccaatgtcggtttctgatccacaacccgttgtcgttgaatcaccg
agcaccgattttggtcttaaaccatcacttgcagatccagacagtgaaagggatgctgtt
gtcacagaaatggagatagatcctgcaaaagattcagaatcgaaaaaagaaagcgacagg
ttgatgccaatagatcttgatctcatcgacgaaaagcctgaaccatctgctcgagtagaa
atggccgaatcatcttctcgtgttccagcttccgatgatccatgcccagatcagccagat
tctacacctctaccggagaaacgtagcgttgttgatgaaatggaagttgaagtgagcaag
gacatcgcttcaccagaatataacgaggaaggtaacccgcaggtgatcgtgttagatgat
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (27)   

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