KEGG T05246: 111481600

Cucurbita maxima (winter squash): 111481600

Entry

111481600         CDS       T05246

Name

(RefSeq) carbon catabolite repressor protein 4 homolog 1-like

K12603

CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]

Organism

cmax Cucurbita maxima (winter squash)

Pathway

cmax03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:cmax00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111481600
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmax03019]
    111481600
Enzymes [BR:cmax01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     111481600
Messenger RNA biogenesis [BR:cmax03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111481600
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     111481600

SSDB

Motif

Pfam:

Exo_endo_phos zf-C6H2

Other DBs

NCBI-GeneID:

111481600

NCBI-ProteinID:

XP_022982890

UniProt:

A0A6J1IXT3

Position

Unknown

AA seq 605 aa
MLSVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAPIDGQFLRYRWYRLQSDK
KVAVCSVHPSEQATLQCLGCVKAKIPAFKSYHCTTKCFSDSWQHHRVLHDRAASSMNENG
NEEEELFGRYNNNNSASGVINSSSSSSTISTSLTNGLTPLYPAAVTQKTGVETWLEVGRY
KSYTPTAEDIGHVLKFECAVVDMETMLPVASPLTVLTSRVIPAPSASPRCLIPVNGVDVM
GKLDLDGRVSSGTFTVLSYNILADVYATSETFSYCPSWALSWPYRRQNLLREIVGYRADI
ICLQEVQSDHFMEFFAPELDKHGYQALYKRKTNELYNGNIQTIDGCATFFRRDRFAHVKK
YEVEFNKAAQSLTDPATILTAQKRNAINRLIKDDVALIVVLESKFSTPTVDNPGKRQLVC
VANTHINGNQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHHLLARGK
VEPTHPDLAVDPLNLCQPHSKLSHQLPLVSAYSSFAIKGVGIGLDKQRKRLDPTTNEPLF
TNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPVWSSDHIALLAEFRCK
SRPRR

NT seq 1818 nt +upstreamnt +downstreamnt
atgctgagcgtggtacgcgtgcacctgccctctgatattcctattgtaggttgcgaactc
acgccctacgtcctccatcgccgcccagataaaaacatcagtaccgacgatgtatctgag
tccgctcctattgatggtcaattcctgagatacagatggtatcgcttacagagtgataaa
aaagttgctgtttgtagtgtgcatccttctgagcaagccactttacagtgcttaggttgt
gttaaagccaaaattcctgctttcaaaagttatcattgcaccaccaaatgtttctcagat
tcttggcagcatcatcgtgttctacatgaccgtgctgcaagttctatgaatgaaaatggt
aatgaagaggaagagttatttggacgttataataataataattctgcatctggtgtcatc
aactctagctcttctagttctacgattagtactagcttgacaaatggtttaacgccattg
tacccggcagctgttacgcaaaagacaggtgtggaaacttggttagaagtaggacgctat
aagagttacacaccaactgctgaagatattggccatgtcctcaagtttgaatgtgctgtt
gttgatatggaaaccatgttgcctgtggcttctccacttactgtattaacttctcgggtc
attccagctccatctgctagtccacgttgcttaatacctgttaatggggttgatgtgatg
ggaaagctggatttggatggtcgagtatcgtcaggaacttttacagtgctttcctacaat
attttggctgatgtgtatgctacaagtgaaacattcagttattgcccttcatgggccctt
tcatggccatatcgccgacaaaatctgctccgggaaatagttggctatcgtgcagatata
atttgtcttcaggaggttcagagtgatcactttatggaattttttgctcccgaactggac
aaacatggatatcaggcactttacaagagaaaaaccaatgagctctacaatgggaacatt
caaactattgatggctgtgcaacatttttccgtagagatagatttgcacatgtcaaaaaa
tatgaggttgagttcaacaaagctgcacaatctttgactgatcctgcgactatcctaact
gctcaaaagagaaatgctataaacagattaatcaaggatgatgttgcacttatcgtagtt
cttgaatcaaagttcagcactccaacggttgataatccaggaaaaaggcagcttgtttgt
gtggccaatacgcatattaatgggaatcaagatttgaaagatgtcaagctctggcaggtg
catactctattgaaaggactcgagaaaatagcagtcagtgcagatattccaatgttggtc
tgtggggattttaattctgttcctggaagtgccccacatcatcttcttgctagggggaaa
gtagaaccgacacatccagatttagctgtagatcctctaaatctatgtcaaccacatagc
aaactgtcacatcagctaccgttggttagtgcttactcctcctttgcaataaagggagtc
ggcatcggtttagataagcagaggaaaaggctggatcctacaacaaatgaacccttattt
acaaattgtactagagattttatcggaaccctggactacatattctacacggcggacact
ttaacagtggagtctttgttagagctcttggatgaagagagcttgagaaaagatacagca
cttccatccccagtatggtcctccgatcacatagcacttcttgccgagttccgatgcaaa
tctcgtcctagacgttaa

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