KEGG   Cyanidioschyzon merolae: CYME_CMN113C
Entry
CYME_CMN113C      CDS       T00175                                 
Name
(RefSeq) cullin 4
  KO
K10609  cullin 4
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03420  Nucleotide excision repair
cme04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CYME_CMN113C
  09124 Replication and repair
   03420 Nucleotide excision repair
    CYME_CMN113C
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cme04121]
    CYME_CMN113C
   03400 DNA repair and recombination proteins [BR:cme03400]
    CYME_CMN113C
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cme04147]
    CYME_CMN113C
Ubiquitin system [BR:cme04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     CYME_CMN113C
DNA repair and recombination proteins [BR:cme03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CYME_CMN113C
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      CYME_CMN113C
Exosome [BR:cme04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   CYME_CMN113C
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 16995331
NCBI-ProteinID: XP_005537265
UniProt: M1V962
Position
14:complement(294445..296703)
AA seq 752 aa
MESNQRAPKKLIIRPLRREPKLPQEFYQESWTHLARALDQVFSPSSRRPLSYEEHYRRVE
DLCLHHLAKQLYADLQREVDGYLERVFREQLSDPVLAAMLHVAQGSAQAVEPTERPAFAP
VLDVWRAFCERFRDIQAIFLYLDRTYAAESPQVPSLWEMALELFAKHMLAEQQRVLLPTL
GAVLLEIELDRKGKQRGDCSDLRAILREMFAPLGFYRTHFEPLFFQQTRAFYVAKGTEFV
TQGTLSDYLAYFEHSTQAEAERCRLHLEPSTEKPLFAILHDVLGRHCVSVMMDRGLESLL
DAVSLTDLRRLYVLLRSIDELWRLVPRYSDYIRVRGTQIVNDRARDHEMIERLLALLDRA
EQTEREAFQADVRFHNAAQTAFEAALNTRQPTPAERLARSFHDLLRVSSTSIPEPDIRRK
IGKLLELFRYLSGKDSFLAFYKKYLAQRLLFDLTASTACEQYVVELLRAECGAVYVNHLV
NMLKDMDLSQDLLQEYRMGPGSGSSRLPSFTCKVITQAYWNSSESFLLQVPPGLESQQRS
FHRFYHARFSGRRLIWEPSLSSAELRVQFANGEKVLHVTLSQAVVLLLFNERDAWTLAEL
QQQTGIADSAELERILDSLSSSQCPVLIRERGAEAASSGPVTAPARYRFNADLQTSRRRL
RLLDIALLERPPEQVPSGPVASPDRQHQIDAAIVRLLKKQKSLSHADLVQQLGAELCFGP
SVSDVKQRVESLLQREYIGRDERDPNLYHYVS
NT seq 2259 nt   +upstreamnt  +downstreamnt
atggaatcaaaccagcgagcacccaaaaagctcattattcggccgctccggcgggagccg
aaactcccccaggagttctatcaggagagctggactcacctggcacgggcactcgaccag
gtgttctcgccttcttcgcggaggccgctctcgtacgaagagcactatcgccgcgtggag
gacttgtgtctgcaccatctcgcaaagcagctgtacgcggacttgcagcgggaggtggac
gggtatctcgagcgcgtttttcgggaacagctgagcgatcccgtcctagcggctatgctg
cacgtggcacagggtagcgctcaggcagttgaaccaacggagcggcccgcttttgctcct
gtgctcgatgtgtggcgagctttctgtgagcgatttcgggatatccaggcgatttttctc
tacctcgatcggacttatgcggcggaaagtcctcaggtgccgtcgctgtgggagatggcg
ctagagctgttcgcgaagcacatgctcgcggaacaacaacgcgtcctcctgccgacgctc
ggagcagtgcttctggaaatcgagctggatcgcaaaggcaaacagcgaggagattgctca
gacttacgcgctattcttagggagatgttcgcaccgttgggtttctatcgcacccacttc
gagccgctcttcttccagcagacgcgcgcattttatgtggcgaaaggcaccgaatttgtc
acacagggaactctatcggactatttggcctattttgagcacagtacacaggccgaggct
gagcgctgccgcctccacctcgagccgagcacggagaaaccgctgttcgcgatcctgcac
gatgtgctcggtcgccactgtgtgagtgtgatgatggatcggggcctggagagcctctta
gacgctgtatctctaacggatttgcgtcgtctctatgtgctgttgcgatccatagatgaa
ttgtggcgtcttgtgccgcgctacagtgattatattcgtgttcgagggacacagatcgtg
aacgatcgggcgcgtgatcacgaaatgatagagcgattgttagcgttgctggatcgtgcc
gagcaaaccgaacgggaagcgtttcaggcagacgttcgtttccataatgcagcccagacg
gcttttgaggcggcgctgaacacccgccagcctacaccggcggagcgcttggctcgctct
tttcacgacctgctgcgcgtgagcagcacctcgattccggagccggacatacggcgcaaa
atcggaaagcttttggagctctttcgttatcttagcggcaaggatagttttctggccttt
tacaaaaagtatctggcacagcgcttgctattcgatctcactgcgtcgacggcctgcgag
cagtacgtggtggaactgctacgcgccgaatgtggcgcagtctatgtcaatcatctcgtc
aatatgctcaaagatatggatcttagtcaggaccttttgcaggagtaccgaatgggtccg
ggatcgggttcatctcgattgccgtcgttcacctgcaaagtcatcacacaggcatactgg
aacagtagcgaatctttcttgctgcaggtaccaccggggctggagagtcagcagcgctct
tttcatcgcttttatcacgcacgattttctggaaggcgccttatctgggagccgtctctg
agttccgcagagctacgggtgcagtttgctaacggcgagaaagtgcttcacgttacgctg
agccaggccgtggtgctgctgctcttcaacgaacgggatgcttggacgcttgcggaacta
cagcagcagaccggtatcgcggactctgcggagcttgaacggattctggattctctctcc
tcatcgcagtgtccggtgctgattcgagagcgtggtgcagaagctgcctcatcagggcct
gtgaccgctcctgcacgctatcgtttcaacgccgatctgcagacaagtcgtcgtcgtttg
cgacttttggacattgccttgttggagcggccgcccgagcaggtaccgagcggcccggta
gcgagccctgatcgacagcaccaaatcgatgcagccatcgtgcggttgctgaagaaacag
aagagtctgtcgcatgcagacctcgtgcagcagcttggcgccgagctctgcttcggaccg
tcggtttcggatgtgaagcagcgcgttgaatcgctcctccaacgtgaatacatcggccgc
gatgagcgggaccctaacctgtaccactatgtgagttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (30)   

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