KEGG   Cyanidioschyzon merolae: CymeCp158
Entry
CymeCp158         CDS       T00175                                 
Symbol
rpoA
Name
(RefSeq) RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
cme  Cyanidioschyzon merolae
Pathway
cme03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cme00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CymeCp158 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cme03021]
    CymeCp158 (rpoA)
   03400 DNA repair and recombination proteins [BR:cme03400]
    CymeCp158 (rpoA)
Enzymes [BR:cme01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CymeCp158 (rpoA)
Transcription machinery [BR:cme03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CymeCp158 (rpoA)
DNA repair and recombination proteins [BR:cme03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CymeCp158 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_CTD RNA_pol_A_bac RNA_pol_L HHH_5
Other DBs
NCBI-GeneID: 844994
NCBI-ProteinID: NP_849090
UniProt: Q85FU3
Position
CP:115296..116246
AA seq 316 aa
MCMSQFPIEFQIECAASTINHARDIYAKFILQPLSYTQALTMGNSLRRVLLSELESISIT
AVRIAGASHELATLKGVREDVLQIMLNLKQIVWRGQLKKQPTITRLKVQGPAIVTAAAFQ
SEANSSANIIDTCQYIATIDTQDILEMECQLEQSSGYRLAKPSEMIDWLPIDGVFMPVKR
VNFWVDKALVDKVLVDKALHLEIWTNGSISPQEALHQAARILTHWFNPLQTLEWKTSHTK
NEQTMAQLSNMLIEELDLSVRAYNCLKRAQIHSVADLMQYTQEELLALKNFGQKSVEEVN
KALEQKLHCQLKKYVD
NT seq 951 nt   +upstreamnt  +downstreamnt
atgtgcatgagtcaatttccaatagaatttcaaatagaatgtgcagcttcaaccattaat
catgcaagagatatttatgccaaatttatcttgcaaccattgagctacacgcaagcgctt
actatgggcaattctttgaggcgtgtattgttatccgagttggagagtataagcattaca
gcggtgagaatagccggtgctagccatgaattagctactttgaaaggtgtgagagaagat
gttttgcaaatcatgttaaatttgaaacaaattgtatggcggggtcaactaaaaaaacag
ccaaccattacaagattgaaagtgcaaggacctgctatagtaactgcggcagcttttcaa
agtgaagccaattctagcgccaatattatagacacttgtcaatacatagctacaattgat
acacaagatatattggaaatggaatgtcaattggagcaatcaagtggttatagattagcc
aagcccagtgaaatgattgattggttacctatagatggagtctttatgcctgtcaaacgt
gtgaacttttgggtagataaagcacttgttgataaggtacttgttgataaggcacttcat
ttagaaatatggacaaatggaagcatatcaccacaagaagcactgcatcaggcagcaaga
attttaacccattggtttaatccattgcaaaccttggaatggaaaaccagtcatacaaaa
aacgaacaaacaatggcacaactatcgaatatgctcatagaagaattggatttgtcagtg
agagcttacaattgtttaaaaagagctcaaattcattccgtggctgatttaatgcaatat
acacaagaggaattattagcgttaaaaaatttcggtcaaaagtcggtagaagaggtgaat
aaagctttagaacaaaaactgcattgtcaattgaaaaaatatgttgattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

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