KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_0854
Entry
CMM_0854          CDS       T00529                                 
Symbol
lysS
Name
(GenBank) lysyl-tRNA synthetase (Lysine-tRNA ligase) (YP_062939.1| lysyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07]; ZP_00227523.1| COG1190: Lysyl-tRNA synthetase (class II) [Kineococcus radiotolerans SRS30216]). pfam01336, tRNA_anti, OB-fold nucleic acid binding domain. pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N). Other tRNA synthetase sub-families are too dis; High confidence in function and specificity
  KO
K04567  lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Pathway
cmi00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    CMM_0854 (lysS)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:cmi01007]
    CMM_0854 (lysS)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cmi03016]
    CMM_0854 (lysS)
Enzymes [BR:cmi01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.6  lysine---tRNA ligase
     CMM_0854 (lysS)
Amino acid related enzymes [BR:cmi01007]
 Aminoacyl-tRNA synthetase
  Class II (A)
   CMM_0854 (lysS)
Transfer RNA biogenesis [BR:cmi03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    CMM_0854 (lysS)
 Prokaryotic type
   Other AARSs
    CMM_0854 (lysS)
SSDB
Motif
Pfam: tRNA-synt_2 tRNA_anti-codon tRNA-synt_2d TOBE_3
Other DBs
NCBI-ProteinID: CAN00890
UniProt: A5CP94
Position
974122..975663
AA seq 513 aa
MTDSPGTPATPETAPAPAVEGSAEDVAEQKAVRLAKRARLNAEGGPGEGAYPVQVPVTTT
IPAVRAEFGHLEPGEETDHVVGIAGRVVHFRNTGKLCFATLQAGDGTRIQAMISLAEVGE
EALAAWKELVDLGDHVFVAGRVIASRKGELSIMAAEWRIASKALLPLPNLHSELSDETRV
RSRYLDLIVRDQARKNVLDRAKVNASMRETFRQRGYVEVETPMLQVMHGGASARPFVTHS
NAFDTEMYLRIAPELYLKRAVVGGIDRVFEINRNFRNEGADSTHSPEFAMLEAYEAYGDY
TSIAELTQTLVQDAAMAVAGSHVVTWADGTEYDLGGEWDRISMYGSLSAAAGVDITPATT
GDELQAIADREGVVVPLSTHGKLVEELWEHFVKGGLERPTFVLDFPVETSPLTRAHRSIE
GVVEKWDLYIRGFELATGYSELVDPVVQRERFVDQARQSARGDDEAMPLDEEFLRALEHG
MPPSGGMGMGVDRLLMAITGLGIRETILFPLVK
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgaccgacagccccggaacgcccgcgacgcccgagaccgcccccgctcccgccgtggag
ggatccgccgaggacgtcgccgagcagaaggccgtgcgcctcgccaagcgcgcccgcctc
aacgccgagggcggccccggcgagggcgcgtacccggtgcaggtgcccgtcacgaccacg
atccccgcggtccgcgccgagttcggccacctcgagcccggcgaggagaccgaccacgtg
gtcggcatcgccggccgcgtcgtccacttccgcaacaccggcaagctctgcttcgccacg
ctccaggcgggcgacggaacccgcatccaggccatgatctcgctggccgaggtcggcgag
gaggcgctcgccgcgtggaaggagctcgtcgacctcggcgaccacgtcttcgtcgccggc
cgcgtcatcgcgagccgcaagggcgagctgtcgatcatggccgccgagtggcgcatcgcc
tcgaaggccctgctgcccctgccgaacctgcactcggagctctcggacgagacccgcgtc
cgcagccggtacctcgacctcatcgtgcgcgaccaggcgcgcaagaacgtcctcgaccgc
gcgaaggtcaacgcctccatgcgcgagacgttccgccagcgcggctacgtcgaggtcgag
acccccatgctgcaggtgatgcacggcggcgcctccgcccgcccgttcgtcacgcactcc
aacgccttcgacaccgagatgtacctccgcatcgcgcccgagctctacctcaagcgcgcg
gtcgtcggcggcatcgaccgcgtgttcgagatcaaccgcaacttccgcaacgagggcgcc
gactcgacgcacagccccgagttcgcgatgctcgaggcgtacgaggcctacggcgactac
acctccatcgccgagctcacccagacgctcgtgcaggacgcggcgatggcggtggccggc
agccacgtggtcacgtgggccgacggcaccgagtacgacctcggcggcgagtgggaccgc
atctccatgtacggctcgctgagcgcggccgctggcgtcgacatcacgcccgccaccacc
ggcgacgagctccaggccatcgccgaccgcgagggcgtcgtcgtgccgctgagcacgcac
ggcaagctcgtcgaggagctctgggagcacttcgtgaagggcggcctcgagcgcccgacc
ttcgtgctcgacttcccggtcgagacctccccgctcacgcgcgcgcaccgctccatcgag
ggcgtcgtcgagaagtgggacctctacatccgcggcttcgagctggccaccggctactcc
gagctcgtggatcccgtcgtgcagcgcgagcgcttcgtcgaccaggcgcgccagtcggcg
cgcggcgacgacgaggccatgccgctcgacgaggagttcctccgtgccctggagcacggc
atgccgccctcgggcggcatgggcatgggggtcgaccggctcctcatggccatcaccggt
ctcggcatccgcgagaccatcctgttccccctagtgaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system