KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_1156
Entry
CMM_1156          CDS       T00529                                 
Name
(GenBank) unnamed protein product; Region start changed from 1322556 to 1322682 (-126 bases)
  KO
K03628  transcription termination factor Rho
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CMM_1156
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmi03021]
    CMM_1156
   03019 Messenger RNA biogenesis [BR:cmi03019]
    CMM_1156
Transcription machinery [BR:cmi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CMM_1156
Messenger RNA biogenesis [BR:cmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CMM_1156
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA NACHT
Other DBs
NCBI-ProteinID: CAN01200
UniProt: A5CQ47
Position
1322682..1325153
AA seq 823 aa
MTDVDTRATTADLSALRVSQLQAIASELGIPGGSKLRKGELVTAISEIQAAGGTTAPADE
MAPEAAAPAETSEAAPAAAEPAAAVEEAPASEPVVADAAPIADAVPAADATPAEAPVAAT
PAVDAPAEQPARSGRGSRRASTARIVPERIAETVEAPAAEPAGTGLEARIAEATAGRTQE
PLTEAPRTEAPARSGRGSRRATSSGVVDPATEAPRQAAQHVNSGQTADQLVPADAQADAQ
APAVDAPTEEQAPAQRSGRGRRRGGRDAQDGADRAAAQDAPAPDTADESPAAEQADRQRD
DRDGDDQGGRRDDQGREGREGGRNRSRNRRNRDRGRDQDDQQQNGRDQGQPQQAPREPDA
DDEAQEEARTGRQRQNGRGQGDRTQDVRADQARADLGRDDDRGGRSRYRDRKRGRGQGGD
DFEPEVTEDDVLLPVAGILDVLDNYAFVRTSGYLPGTNDVYVSLGQVKKHSLRKGDAIVG
AIRQPRENDSQSRQKYNAIVKIDSVNGLPPEEAANRVEFGKLTPLYPQDRLSLETEPNKL
TTRIIDLVSPIGKGQRGLIVSPPKAGKTLVLQAIANAIATNNPEVHLMVVLVDERPEEVT
DMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLA
APASGRILSGGVDSSALYPPKRFFGAARNIEHGGSLTILATALVETGSKMDEVIFEEFKG
TGNMELRLSRALADKRIFPAVDVNASGTRREEMLMGADEVKVTWKLRRALAGLEQQQALE
IVLSRLKETTSNVEFLMKVQASMPNTGNGVSHQSHGHGAHEKG
NT seq 2472 nt   +upstreamnt  +downstreamnt
atgaccgatgtcgacacccgcgccaccaccgcggacctgagcgcgctccgcgtctcgcag
ctccaggcgatcgcctccgagctcgggatcccgggcggctccaagctccggaagggcgag
ctcgtgaccgcgatctccgagatccaggcagccggggggaccaccgcccccgccgacgag
atggcccccgaggccgccgcgcccgccgagacgagcgaggcggcccccgcggccgccgag
cccgccgccgccgtcgaggaggcccccgcctcggagcccgtcgtcgccgacgccgccccg
atcgcggacgccgtcccagccgcggacgcgacccccgccgaggcgcccgtcgccgcgacc
cccgccgtcgacgccccggccgagcagcccgcgcgctccggccgcggatcccgccgcgcc
agcaccgcccgcatcgtgcccgagcgcatcgccgagaccgtcgaggcgcccgccgccgag
cccgcgggtaccggcctcgaggcccgcatcgccgaggccacggcaggccgcacgcaggag
cccctcaccgaggcaccccgcaccgaggcgcccgcgcgctccggccgcggatcccgccgg
gccacgagctccggcgtcgtggaccccgcgaccgaggccccgcgccaggccgcgcagcac
gtgaacagcggccagaccgccgaccagctcgtccccgccgacgcgcaggccgacgcgcag
gcgcccgccgtcgacgcgcccaccgaggagcaggcccccgcgcagcgctccggccgcggc
cgtcgccgcggcggacgcgacgcccaggacggcgccgaccgcgccgccgcgcaggacgcg
cccgccccggacaccgcagacgagtcccccgccgcggagcaggccgaccgtcagcgcgac
gaccgcgacggcgacgaccagggcggacgccgcgacgaccagggccgcgagggtcgcgag
ggcggccgcaaccgcagccgcaaccggcgcaaccgcgaccgtggccgcgaccaggacgac
cagcagcagaacggccgcgaccagggccagccgcagcaggccccccgcgagcccgacgcc
gacgacgaggcgcaggaggaggcccgcacgggtcgccagcgccagaacggccgcggccag
ggcgaccgcacgcaggacgtgcgcgccgaccaggcccgcgccgacctcggccgcgacgac
gaccgcggcggccgcagccggtaccgcgaccgcaagcgcggccgcggacagggcggcgac
gacttcgagcccgaggtcaccgaggacgacgtcctgctgcccgtcgcgggcatcctcgac
gtgctcgacaactacgcgttcgtccgcacgagcggctacctgcccggcacgaacgacgtc
tacgtctcgctcggccaggtcaagaagcactcgctgcgcaagggcgacgcgatcgtcggc
gccatccgccagccgcgggagaacgacagccagagccgccagaagtacaacgcgatcgtg
aagatcgactcggtcaacggcctgccgcccgaggaggccgcgaaccgcgtcgagttcggc
aagctcacgccgctgtacccgcaggaccgcctcagcctcgagaccgagcccaacaagctc
acgacgcggatcatcgacctcgtgtcgccgatcggcaagggccagcgcggcctcatcgtc
tcgccgcccaaggccggcaagacgctcgtcctccaggccatcgcgaacgccatcgccacc
aacaaccccgaggtccacctcatggtcgtgctggtcgacgagcgtcccgaggaggtcacc
gacatgcagcgcacggtgaagggcgaggtcatcgcctcgaccttcgaccgtcccgccgag
gaccacaccacggtcgccgagctcgccatcgagcgcgccaagcgcctcgtggagctcggc
cacgacgtggtcgtgctgctcgactccatcacccgcctcggccgcgcgtacaacctcgcg
gcgcccgcgtcgggccggatcctctcgggcggcgtcgactcgtcggcgctctacccgccg
aagcgcttcttcggcgcggcgcgcaacatcgagcacggcggatcgctcacgatcctcgcc
acggcgctcgtggagaccggatccaagatggacgaggtcatcttcgaggagttcaagggc
accggcaacatggagctccgcctctcgcgggccctcgccgacaagcggatcttccccgcg
gtcgacgtcaacgcctccggcacgcgccgcgaggagatgctcatgggcgccgacgaggtc
aaggtcacctggaagctgcgccgcgccctcgccgggctcgagcagcagcaggccctcgag
atcgtcctcagccgcctgaaggagacgacgtccaacgtcgagttcctcatgaaggtccag
gcctccatgcccaacaccggcaacggcgtgtcccaccagagccacgggcacggcgcgcac
gagaagggctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (47)   

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