KEGG   Clavibacter michiganensis subsp. michiganensis: CMM_1225
Entry
CMM_1225          CDS       T00529                                 
Name
(GenBank) putative ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
cmi  Clavibacter michiganensis subsp. michiganensis
Pathway
cmi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CMM_1225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmi03019]
    CMM_1225
   03009 Ribosome biogenesis [BR:cmi03009]
    CMM_1225
Messenger RNA biogenesis [BR:cmi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CMM_1225
Ribosome biogenesis [BR:cmi03009]
 Prokaryotic type
  rRNA helicases
   CMM_1225
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 HEM4 adh_short AAA_22 UvrA_inter AIRS_C Maf_flag10_N
Other DBs
NCBI-ProteinID: CAN01269
UniProt: A5CQB6
Position
complement(1396033..1397793)
AA seq 586 aa
MSTDDTASTPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLG
VAQTGTGKTAAFALPILSNLDVSQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLP
VYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAE
DVETILADTPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVS
YPQKVDALTRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTV
EQLKNGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISF
VTPRERRLLTAIEKATRQPLTEMRMPSAEDVNVTRLSRFDDAITAALADRERLDAFRDIV
GHYVNHHDVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDERGERR
ARPARGSGNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAG
LPQDRIDRLASTVINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgagcactgacgacaccgcatccacccccgacgcggacgccgccccccgcacgaccttc
agcgacctcggtctctccgaccaggtgctcaaggcactcaaggacgtgggctacgagacg
ccctccgcgatccaggcggccacgatcccctccctcctctccggccgcgacgtcctcggc
gtcgcgcagaccggcaccggcaagacggccgcgttcgcgctgccgatcctctccaacctc
gacgtgtcccagaagaccccgcaggccctcgtgctcgcgcccacccgcgagctcgccctc
caggtgtgcgaggcgttcgagcgctacgcgtcgggcatgcgcggcgtgcacgtgctcccc
gtctacggcggccagggctacggcgtgcagctgtcggcgctccgccgcggcgtgcacgtg
gtcgtcggcacccccggccggatcatggaccacctcgacaagggcaccctcgacctgtcg
cagctgaagttcctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcggag
gacgtggagacgatcctcgccgacaccccgaagtcgaagcagatcgcgctgttctcggcg
acgatgcccgcgcagatccgccgcatctcgggcaagtacctgcaggaccccgaggagatc
acggtcaagaacaagaccacgacctccgcgaacacgactcagcggtacctgatggtgtcg
tacccgcagaaggtcgacgccctcacgcgcatcctcgagaccgagaacttcgagggcatg
atcgtgttcgtccgcaccaagaacgagacggagacgctcgcggagaagctgcgggcccgc
ggctacgcggcagccgccatctcgggcgacgtcgcgcaggcgcagcgcgagcgcacggtc
gagcagctcaagaacggcaagctcgacatcctcgtggccaccgacgtcgcggcccgcggg
ctcgacgtcgaccggatcagccacgtcgtcaactacgacatccccatcgacaccgagtcg
tacgtccaccgcatcggccgcacgggccgcgccggacgcagcggtgcggcgatcagcttc
gtcacgccgcgcgagcgccgcctcctcaccgccatcgagaaggccacgcgccagccgctc
accgagatgcgcatgccgagcgccgaggacgtgaacgtgacgcgcctctcccgcttcgac
gacgcgatcaccgcggccctcgccgaccgcgagcgcctcgatgcgttccgcgacatcgtg
ggccactacgtgaaccatcacgacgtcgtcgagtccgacgtggccgccgcgctcgccatc
gtggcgcagggcgacacgccgctcctgctctcggccgacgacctccgcccgccgcgcgtc
gagcgcgagcgccgcgacgaccgcccgggccgcgacggcgacgagcgcggcgagcgtcgc
gcccgtcccgcgcgcggcagcggcaacatggcgacgtaccgcatcgacgtcggccgccgt
caccgcgtggagccgcgccagatcgtcggcgcgctcgccaacgagggcggcttcagccgc
gaggacttcggccacatcgacatccgccccgacttctcgctcgtcgagctgccggcgggt
ctgccgcaggaccggatcgacaggctcgcgagcacggtcatcaacggccgtccgatcgac
atccgccccgaccgcggcggcccccgtgccgccgagcgcggtgcggccccggagcgtcgc
gggcggaagccgcgcgactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (27)   

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