KEGG   Callorhinchus milii (elephant shark): 103174834
Entry
103174834         CDS       T03088                                 
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03022  Basal transcription factors
cmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103174834 (gtf2h1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    103174834 (gtf2h1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    103174834 (gtf2h1)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103174834 (gtf2h1)
Transcription machinery [BR:cmk03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103174834 (gtf2h1)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103174834 (gtf2h1)
SSDB
Motif
Pfam: BSD PH_TFIIH DpaA_N
Other DBs
NCBI-GeneID: 103174834
NCBI-ProteinID: XP_007885593
UniProt: V9KPZ9
Position
Unknown
AA seq 548 aa
MATSSEEVLLIVKKVRYKKQDGALYLMAERVAWTPEGKDRFVISHMYADIRCQKISPDGK
AKVQLQLVLHTGDATNFHFTNESSAGASARDRDAAKDLLQQLLPKFKKKANKELEEKNRM
LQEDPLLFQLYKDLVVSQVISAEEFWANRLSGSSVDNAVSANKQDIGISAAFLADVRPQT
DGCNGLRYNLTSDIIQSIFRTYPAVKQKYAENVPHNMTEKEFWTRFFQSHYFHRDRINSG
SKDLFSECAKIDEKGLKVLVSQGVRNPLVDLTSLEDKSLDEGYGTSCGTSSSKSVKENSN
AAIIRRFNHHSAMVLAAGLRKQETQNDHNSETSSTDGNSHDSDCFQLPVKKVKLQEAIEY
EDLEEKNTRRTYALNLKKADRYFHGPTPVQSQQYASSQEIINSVHCIRQEMAAYSPKLTQ
VLSSSAASTAITDLSPGGVLMQGGTSQSINQMVPADVQVELKHLYVAVAELLRHFWSCFP
VNTPFLEDKVGKMMNNLERFQITKLRPFREKLQKQYINTNLAGHLEDMVNVAYNKFHAWQ
SKRMLKKT
NT seq 1647 nt   +upstreamnt  +downstreamnt
atggctacctcgtcagaagaggtgctgctgattgtgaagaaggttcgctataagaagcag
gatggggctctgtacctgatggcggagcgcgtggcgtggaccccagaggggaaggaccgc
tttgtcatcagtcacatgtatgcagacatccggtgtcagaagatcagccctgatgggaag
gccaaagttcagctgcagctggtgttacacacgggcgatgccacaaactttcacttcacc
aatgaaagcagtgcgggcgcatcagccagggaccgagatgctgccaaggatctgcttcag
cagctgctgcctaagttcaagaagaaagcaaacaaggaactggaggagaagaacagaatg
ctgcaggaggacccgctgctctttcagctctacaaggatttggttgtgagtcaagtgatc
agcgctgaagaattctgggccaatcggctgagtggcagctcggtggataacgctgtatct
gctaacaagcaggatattggcatctccgcggcgttcctggctgacgtgcgaccgcagact
gatggctgtaatggcctccggtacaatctgacctcagacatcattcagtccatcttcagg
acgtatcccgcagtgaaacagaagtatgcagagaacgtcccgcacaacatgacggaaaaa
gaattctggacacgcttcttccagtcgcattatttccacagggacaggatcaactctgga
tccaaagatctcttctcggagtgcgccaagatcgacgagaaagggttgaaagttctagtc
agtcagggagtgaggaacccgctcgtggatctgacatcactcgaggacaagtcactggat
gagggatatgggacctcgtgcggcacgtcctcctccaaatctgtcaaagagaacagcaac
gccgccatcatccgccgtttcaaccatcacagcgccatggtgctggctgccggcctccgc
aaacaagaaacacaaaatgatcataacagtgagaccagcagcacagacgggaattcacat
gattctgactgtttccagctgccggtcaaaaaggtaaagttacaggaagccatagagtat
gaagacctagaggagaagaacacgaggaggacgtatgcactaaatctgaagaaagctgac
agatactttcacggtccaactcctgttcagtcccagcaatacgcctccagccaggagatc
attaactcagtgcactgtatccggcaggagatggctgcttattctcccaaacttactcag
gttttgtccagtagtgcagccagcactgccatcacggacctttcacctggtggcgtgctc
atgcagggagggacatcgcaatcgatcaaccagatggtgccggcggatgtgcaggtggag
ctgaagcacttgtacgtggctgtagctgagctgctgagacacttctggtcctgttttcct
gtcaatacaccgttcctggaggataaggtggggaagatgatgaacaacctggagaggttt
cagataacaaagctgcgaccatttcgagagaagctgcaaaagcaatacatcaacaccaac
ctggctggtcacttggaggatatggtgaacgtggcctacaataagttccatgcctggcag
tcaaagcgaatgctgaagaagacgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (39)   

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