KEGG   Callorhinchus milii (elephant shark): 103180526
Entry
103180526         CDS       T03088                                 
Symbol
polr2j
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB11-a
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03020  RNA polymerase
cmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103180526 (polr2j)
  09124 Replication and repair
   03420 Nucleotide excision repair
    103180526 (polr2j)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    103180526 (polr2j)
   03400 DNA repair and recombination proteins [BR:cmk03400]
    103180526 (polr2j)
Transcription machinery [BR:cmk03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     103180526 (polr2j)
DNA repair and recombination proteins [BR:cmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      103180526 (polr2j)
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L SHNi-TPR
Other DBs
NCBI-GeneID: 103180526
NCBI-ProteinID: NP_001279916
UniProt: K4FSL3
AA seq 117 aa
MNAPPAFESFLLFEGEKKITITKDTKVPNACLFTINKEDHTLGNTIRSQLLKDPQVLFAG
YKVPHPLEHKVVIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDRQEGIE
NT seq 354 nt   +upstreamnt  +downstreamnt
atgaacgcacctcccgctttcgagtcttttctgctgtttgaaggggagaaaaaaataacg
ataaccaaggacacgaaggtgccaaatgcctgtttgttcacaatcaacaaggaggatcac
acgctcgggaacaccatcagatcgcagttgctgaaagaccctcaagtgttgtttgcgggt
tacaaagtgccgcatcctctggagcacaaagtggtgatccgcgtccagaccactcccgat
tacagcccacaggaagccttcacgaacgccatcactgatctgatcagtgaactctcactg
ttggaggaacgattccgggttgcaattaaagacagacaggaaggaattgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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