KEGG T03088: 103180547

Callorhinchus milii (elephant shark): 103180547

Entry

103180547         CDS       T03088

Symbol

btaf1

Name

(RefSeq) TATA-binding protein-associated factor 172 isoform X1

K15192

TATA-binding protein-associated factor [EC:5.6.2.-]

Organism

cmk Callorhinchus milii (elephant shark)

Brite

KEGG Orthology (KO) [BR:cmk00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmk03021]
    103180547 (btaf1)
Transcription machinery [BR:cmk03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     103180547 (btaf1)

SSDB

Motif

Pfam:

DUF3535 SNF2-rel_dom HEAT Helicase_C Vac14_Fab1_bd HEAT_2 UTP20_C HEAT_EZ Arm

Other DBs

NCBI-GeneID:

103180547

NCBI-ProteinID:

XP_007894671

Position

Unknown

AA seq 1862 aa
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELHNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNVPEWNPTPKQEPGSETQMEEASSDRLSFTRFDISRLLKHGASLLGSAG
VEFEIQHEKSGEVDPKERIAHQRKLLQKKLGLDMGAALGMNTEELFNDEDLIYNPPPAPP
VIKQPVGRTTGCLTSRNHALVQAADLIEAEFQPGMSSRQKNKAKRMAKLFAKQRSRDTVE
GNANNEKCNDNIDGEPEEKRRKLTNVVIDQSATESKVLVDNVPHNSSLFDESNEWPLESL
CEELCNDLFNPSWEIRHGAGTGLREILKAHGKSGGKMGDSTLEEIEQQHQEWLEDLAIRL
LCVFALDRFGDFVSDEVVAPVRETCAQTLGVVLKYMNEVRVHGTVDVLLKLLEQEQWEVR
HGGLLGIKYALAIRQDLIETLLPKVLPAIIEGLQDLDDDVRAVAAAALVPVVESLVDLKA
SEVPFIINTLWNALLDLDDLTASTNSIMTLLSSLLTYRQVQQHSIQQSLTVLVPRVWPFL
RHTISSVRKAALETLFTLLSTQDESCVTWLTPILQDMLRHIYQSCILESSHEILELIQKV
WLELLKKAPVQYVVAAACPWMGAWLCLMMQPSLMPIDSNMLLEVKAKSKDKSCSKQRQWQ
APTKEVTQESIAGSDTINEDQATRDYVVTRTRLMAAKLLGALCCSMCDSTVNSTIQEVKP
AESLAQLLLFHLNSKSALQRIAVALVISEWAVLQKDCSIVSNAAQPRLMAILSEHLYYDE
IAIPFTRMQNECKQLITSLADANCDVGNRVNNNVLTIDQANELVTTIFNEVTSNCSLMPN
VLQLLDGKRQQVQMTVAETNQEWQTLHLRVHMFAACAVINLQQLPEKLNPVIKPLMEAAK
KEENILVQNYAASSIAKLLQQCTSRCPCPNPKIVKNLCNSVCVDSTVTPSAISPVALPNS
LENSKGPNSEKDGMHHTVNKTRGIITLYRHQQAAFALTSRRGPTPKALKGSSADMSQGIA
GINLCEHDEAQKPNLIQRRGAEYALTTIGKHFGAEMATSLPYLWDSMVGPLKNHIDVQNF
NGNLVLEKGDVAAQDLVNSLQVLEITAAAMASDIHAQLLEHLPHLCTCLRHPYTAVRHVA
ARCVGVMSKMATMETVSIFLEKVLPWLGAIDDNAKQEGAIEALACMMEQLDVDIVPYIVL
LVVPVLGRMSDQTDSVRFMATQCFATLIRLMPLEAGIPDPPNMSEELIRQKARERHFLEQ
LLDGRKLENYKIPVPIQAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILA
GDHYHRTQDYVKNQAENCFPLPSLVVCPPTLTGHWVDEVGKFCAKEFLNPLHYTGPPTER
ARLQHLIKKHNLVVASYDVVRNDIDFFKNIKWNYCILDEGHVIKNGKTKLSKAVKQLTAN
YRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGV
LAMEALHRQVLPFLLRRMKEDVLQDLPPKIIQDYYCVLSSLQVQLYEDFAKSRAKCDVDE
TISTGTVTEENEKPKLKATGHVFQALQYLRKLCNHPALVLTSQHPEFQHISEQLAAQGSS
LHDIQHAPKLSALKQLLLDCGLGNSGTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLK
PQMPSVTYLRLDGSVPAGQRHSIVARFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEH
DWNPMRDLQAMDRAHRIGQKRVVNVYRLITKGTLEEKIMGLQKFKMNIANTVISQENASL
QSMGTDQLLDLFTLDKESHEDRGSCSTEKSSMKAMLENLGELWDQQQYDTEYDLDTFMHS
LK

NT seq 5589 nt +upstreamnt +downstreamnt
atggcggtgtcgagacttgaccgtctctttattttactggacaccggcaccacaccagta
actagaaaagcagcagctcaacagttgggtgaagtagttaagttacatcctcatgaattg
cacaacctgttatccaaagtgttaacatatttacgtagtcctaattgggatacgcgcatt
gcagctggtcaagcagtagaagctatcgtgaagaatgtgccagaatggaaccctactcca
aagcaagagcctggttcagaaactcaaatggaagaagcgtcttcagatcgtttgagcttt
acccggtttgatatttcacgtctcttgaaacatggagcatctcttcttggttctgctggt
gtagagtttgagattcaacatgagaaatcaggagaagttgacccaaaggagagaatagcg
catcagagaaaactgttgcagaagaagttgggtcttgatatgggagcagctctaggaatg
aacacggaggagctctttaatgatgaagatctcatttataatcctcctccagctccacca
gtaataaaacaacctgtaggtagaaccacaggctgtttgacttcaaggaatcatgcactt
gtgcaagctgctgacctgattgaagctgaatttcagccaggtatgagtagtcggcagaaa
aataaagcaaagagaatggctaaattgttcgctaagcaacgatccagagatacagtggaa
ggaaatgcaaacaatgaaaaatgcaatgataatattgatggggagcctgaggaaaagcgt
aggaaacttacaaatgttgtaattgatcagtcagcaactgaatcaaaggtgttggtggat
aatgtaccacacaactcttcattgtttgatgagtcaaatgaatggcctttggaaagcctt
tgtgaagaactttgtaatgaccttttcaacccttcatgggagattcgtcatggtgcagga
acagggttgagagagattctgaaagctcatgggaagagtggaggtaaaatgggagacagc
actctggaagagattgaacagcagcatcaggaatggttagaagacttggcgatccgtcta
ctttgtgtatttgcacttgacagatttggagattttgtgtctgatgaggttgttgcacct
gtgcgggagacttgtgctcaaactcttggagttgtgttaaagtacatgaatgaggtgaga
gtgcatggaactgttgatgtgcttctaaaactgctggaacaggaacagtgggaagtgaga
catggtggacttctaggaataaaatatgctttggcaattcgtcaagacctaattgagaca
ttgttaccaaaagtacttcctgctataatcgaaggcttacaggacttggatgatgatgtt
cgagcagtagcagcagctgcgctcgtaccagttgtggaaagtctagtagatctgaaagca
tctgaggtaccatttattatcaatacgttatggaatgcccttttggacttagatgatctt
acagcttctacgaatagcattatgactttattgtcatccttattgacatatcggcaagtt
caacagcacagtatccagcaatcgctcactgttttggttccccgtgtttggccatttttg
cgtcatactatttcttctgttcgtaaagcagctttggaaacattattcactcttctgtct
acacaagatgagagctgtgtgacatggttgactccaattttgcaagatatgctacgacat
atctatcaatcctgtattttggaaagcagtcatgaaattttggaacttattcaaaaggtg
tggctggagttgctgaaaaaggcccctgtccagtatgtggtggccgctgcttgtccttgg
atgggggcttggctttgcttaatgatgcaaccttctcttatgccaattgattcaaacatg
ctgctagaggtcaaagccaaatcaaaggataaatcttgcagtaaacagcgacaatggcaa
gctccaacaaaagaagtaacacaggagtctattgctggttcagataccatcaatgaggac
caagcaaccagagattatgttgtaactcgaacacgtcttatggcagccaagttacttgga
gccctctgctgttctatgtgtgattctactgttaattctaccatccaggaagtaaaacca
gctgaatccctagcccagcttttgctgttccatttaaattcaaaatctgctttgcagaga
attgctgtggcgttagttatttctgaatgggctgtattgcaaaaggattgcagcattgtg
tccaatgcagcacagccgcgattgatggcaattttatcagaacatctttattatgatgag
atagccattccattcacacgaatgcagaatgaatgcaaacagctgataacatcattggct
gatgcaaactgtgatgttggaaaccgagtgaataataatgtgcttacaatagaccaagca
aatgaattggtcacaactatattcaatgaagtaacctcaaattgtagtttgatgcccaac
gtgctgcagctgttggatggtaaacgacagcaggtccagatgactgtagcagagaccaat
caagaatggcaaactcttcatctcagggttcacatgtttgctgcctgtgcagttattaat
ttgcagcaacttccagaaaaactgaatccagttataaaacccttaatggaagcagcaaag
aaagaagaaaacatacttgtccagaattatgcagcctcttccattgccaagctcttacag
cagtgcacatccagatgtccttgccctaatcccaaaatagtgaaaaacctttgtaactct
gtgtgtgtggactctacagtcactccttcagcaatctctccagtagccttgcccaacagt
ctggaaaactctaaaggaccaaattccgaaaaagatggaatgcaccacactgtaaataag
actaggggaattattacactttacaggcatcagcaagctgcctttgctttaaccagcagg
cgagggccaactcccaaagcactcaaaggatcatctgcagatatgtctcagggaattgca
gggattaacttgtgtgaacatgatgaggcccagaagccgaacttgattcagaggagagga
gctgaatatgcacttactaccataggaaaacattttggtgctgaaatggccacatcattg
ccatatctctgggattctatggttggaccattgaagaatcatatcgatgtacagaatttc
aatggaaatcttgtccttgagaaaggagatgttgctgctcaagatttagtaaattcattg
caggtgttagaaattactgcagcagcaatggcttctgatatccatgcccagctgttggaa
catcttcctcatctttgcacatgtttacggcacccgtacactgcagtcaggcatgtggcg
gctagatgcgtgggtgtcatgagcaaaatggctactatggaaactgtgagcattttcctg
gagaaagttcttccatggctaggagcaattgatgataatgcaaaacaggaaggagcgatc
gaagcattggcatgtatgatggagcagcttgatgtagacattgtcccatacattgtcctc
ttggtggtgcctgtgctgggcaggatgagtgaccaaacggacagtgtcaggttcatggct
acccagtgctttgcaacccttatcagattaatgccacttgaagctggtattccagatcca
ccaaatatgtcagaagaattaatcagacaaaaagcaagagaacgtcatttcttggaacag
ttgttggatgggaggaaattggaaaactacaaaattcctgttcctatccaagctgaactc
agaaaataccaacaggatggtgtaaattggttggcattccttaacaaatacaagcttcat
ggcattctttgtgatgatatgggtttgggaaagactttacaatctatatgcattcttgca
ggagatcattaccacaggactcaggattatgtaaaaaatcaagcagaaaattgctttcct
ctcccttctttagttgtgtgtcctccaacactgacaggacattgggtagatgaagttggg
aaattctgcgctaaagaatttttgaatcctttgcactatacggggccccctactgaaagg
gcaaggttacagcaccttataaaaaaacacaatcttgttgtagcatcatatgatgttgta
cggaatgacattgactttttcaaaaatattaaatggaactattgtattcttgatgaaggc
cacgtcatcaagaatggcaagacaaaactatcgaaagcagttaagcagctaactgcaaac
tacaggttgattctgtctggtacaccaatacagaataacgtcttggaactatggtcattg
tttgacttcctgatgccaggattcttgggtactgagcgacaatttgcagctcgttatgga
aagcccatattagctagcagagatgccaggagttcttcacgggagcaagaggcgggtgtt
cttgcaatggaagcattacatcgacaggtacttccattcctgttacgcagaatgaaggaa
gatgttcttcaagatcttccacccaagataattcaagattattactgtgttctcagtagt
ttacaggtacaactttatgaagattttgccaaatctcgtgctaagtgcgatgttgacgaa
accatatccacaggtacagtcactgaggaaaatgaaaaacccaaactgaaggctacaggg
catgtattccaggctttacagtacctgagaaaactatgcaatcatccagcactcgtgcta
acatcacagcatccagaattccaacatatttcagagcaacttgctgctcaaggttcatct
cttcatgatattcaacatgctccaaagctctctgctttaaaacagctactgcttgactgt
ggacttggcaatagtggcacttcagaaagtggtactgagtctgttgtagcacaacatcgc
attctcatattctgtcagctgaagagtatgttggatattgtagaacatgatttgctcaaa
ccgcaaatgccaagcgttacttacttaagactggatggcagtgtacctgcaggccagaga
cattccattgtggcaaggtttaataatgacccgtctatagatgtcttgctgctaacgact
cacgttggtggcctaggtctcaatcttactggggcagatacagtagtgttcgtggagcat
gactggaacccaatgcgtgatctgcaggcaatggatcgagcacatcgcattggacagaaa
cgtgtggttaatgtttaccgattaataacaaaaggaaccttggaggaaaaaatcatggga
ttacagaaattcaagatgaatattgcaaatacagtgattagccaagagaatgcaagtctt
cagagcatggggacagatcagcttctggatcttttcactcttgataaggagagccacgaa
gaccggggatcttgttccactgaaaagtcatctatgaaggcaatgctggaaaatcttgga
gaactttgggatcagcaacaatatgacacagaatatgacttggatacatttatgcattct
ctgaagtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (68)   

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