KEGG   Callorhinchus milii (elephant shark): 103187020
Entry
103187020         CDS       T03088                                 
Symbol
col12a1a
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
  KO
K08132  collagen type XII alpha
Organism
cmk  Callorhinchus milii (elephant shark)
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cmk00535]
    103187020 (col12a1a)
Proteoglycans [BR:cmk00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   103187020 (col12a1a)
SSDB
Motif
Pfam: fn3 VWA VWA_2 Collagen Pur_ac_phosph_N NDNF VWA_3 CBM_4_9 DJ-1_PfpI Copine Laminin_G_2
Other DBs
NCBI-GeneID: 103187020
NCBI-ProteinID: XP_007904530
Position
Unknown
AA seq 3017 aa
MRIKLCLALATACAALLALSVEAQVPPPMDLKYKILSESSVQMTWRRPRSRILGYRLTVT
PTDGQPPRELTLGTRVSKTSITDLVPDLEYMISLVAYDRSSESVPVKVKLTIQSSRTPTR
KPKKDEFTPVCSSNANADLVFLVDGSWSVGRPNFRKIREFIYSLVSAFSIGEDQTRVGIV
QYSSDTRTEFSLDRYFDKSELLRAITNLPYKGGNTMTGDAINYLVQKTFVASAGARRSYP
KVAVIITDGKSQDTVQDSAQALRDIGVEVFTLGIKGADLQELQEIASAPIGKHIFQVADF
DNIKDVQTDIIKQVCSGVEEQILELVSGEEVVEPANNLQTIEIASKFLKLVWDPSLGQVT
GYRLQLIPLVPGVEKQEVSLDSQARMAVVQNLNPGTEYQINLYAMRGLASSEPISILETT
QVIGVSIECTLNENSQADVVLLVDGSYSIGLSNFAKVRDFLETLVQTFPVGPNQIQIGLV
QYSRDPNTEFTLNTHSTQASVLEAVRNFPYRGGSTNTGRAMTYVRNKVFVVEKGARFKVP
RVMVLITDGKSSDAFQVPAERLRDAGVEIFAVGVKDAVFSELVTIASKPEHSHVYQVDDF
DSFQRVSAKLTQTLCLRIEEEAVAIKERDFTSPSNLQTSDVTSSSFRVSWTPVGPDVRSY
LLKYRMALGGQLYSIQVPGEEASRVLTDLLPETEYLIQVIAQYENGNSRPLEGKDTTLEE
NGLPRNLLVYDESTNSFKVRWVAAPGNVLHYRLEYTPYSGGEKEEVTIRGTDTSTTLQNL
LTNARYDLRLRAEYRTLVGQPLIGEGSTKEEIGSPRNLVTDNVSSTSFDISWTAAPGNVQ
RYRVTWKSSDDDDSGEIEIPGYLTTTRLTNLQPETRYHIMVFAAYSSGEGDPLEGDETTN
ATEEAKRMLVTDETVNSFRVTWQPAPGKVLHYRVSYRPASGGRTIATKIPPHLTSTVLRR
LSPQTTYDVNVSPMYKHGEGKLRFSQGTTASPYKPPQNLQTSDPQKTSFRVTWDPAPGEV
RGYRITYYPLDDEQQQEQMELGPYDTTVVLEELKADTTYKVAVSGMFQDGESLPLLGQEH
TTLSEDSGVPPLGPPGIQCSTTAAADILLLVDGSWSIGRLNFRQIRSFIGKLIQVFDISP
QRVQFGLAQYSGDPRTEWNLNAHKDKKSLLAAAAALPYKGGNTLTGLALSYILQNNFRED
AGARPFARKIGVLITDGKSQDDVSIPSESLRDLGVELYAVGIKNADVIELRQIATDPDSI
HMYNVADFALLTEIVDDLSRNLCDSVKSGANVEAPTNLEMSEVTPGSFRVTWDHGASVDR
YRVEYQRVAGGPTEQVLVNGRTTSVVLTDLFPETQYNVNVYSLLEGEVSEPLRGSETTLS
IPSVRNFNLFDVTSSSMRMRWDPVPDASGYLIQYAPINANVPVGQKEVKVGPEEADLPLT
ELLPNTEYTVSIHTMYGDIAGDPLTKQEVTLPLSPPRNIRFSDTTHSSTRVHWEPAPGRV
LKYLIKYREVDDPTIKEVEVNRADTSVLLPNLLSQTEYQVYVSAIYDDGPSAPVEGKEST
SVVPAPINLQFSEVGTKQFRVSWEHGAPDVALYRLAWTPVGTTDKKEMILNGDETNQMLE
NLTPDTRYEVSLTAIYPDEMESEDLIDTQSTMPVVSVDEVGPPRNLQVYNATPYSLTVKW
DPAVGRVLRYKVTYTPMSGDPIEKMVKVGPKQHRIVLEKLSPDTPYSIRVASSYKRKDGG
HMTGTGRTKPLASVRNIRVYDPTTSTLSVNWEPAEGVVRQYDVYYVPTTGGPAEEKVTLP
GNTRNVVLRNLLSDTPYKISVVPVFTEGGGARRSATGQTLVRGAPRNIQVYNPSPNSLSV
RWMSAPGPVQQYRVVYAPLTGTRPSEYTVVPANTNSLLLERLQPDTPYSVNVIALYADGE
GGELSSNGKTLPRSGPRNMRVYGPTTNSLSVSWDHADGPVQQYRVIYAPTVGDPIEEFIF
VPGRRNNVVLQPLETDTPYRISVVAMYADGDGGQLTGDGRTVGLLEPSNLRVSDEWYTRF
RVSWDPAPLPVLGYKFIYQPTGVDEPKEIFVGDVTTYTPQNLKPGTTYDVKVYATYDSGD
SEPLVGQGTTLYLNVTGLTTYQVDWDSFCIRWNPHRQASSYRIKLQPVDAQHSGRQEVTV
NGADSSYCFYGLSPNAKYDAMVYTQLPNLEGPGVNVQEQTMIRPTVAPTEPPPPPPPATI
PPAHDVCKGAKADLVFLIDSSWSIGDDNFLKVVQFVFTTIGALDNISPAGMQISFVQFSD
EAKSEFKLNTYADKGHVLSALQMVRYKGGNTKTGRALKFLYDEVFIHSRGMRKSVPKVLV
VVTDGRSQDEVKQPALALQEAGYSVFVVGVADVDFTELRNIASKPSDKHLFVVDDFDAFA
KIEDQLITFLCETASSTCPLIYINGFTTPGYKMMEAFNLTETEASSLPGVSMEPGSFNSY
VAYRLHKDTYLNQPTVDIHPDGLALTYTIMLMFRILPETTSEPFAIWQITNQDYKPEVGV
LVDGNSQTLSFFNKDERGESQTITFDSDEVKKLFYGNFHKVHLLVNQDSVKLIVDCQEVE
EKPANPHGNISTDGFEIFGKLVKSQGAKGRSATFQLQSFDIICSLGWAIRDQCCDLPSMR
IEAKCPALPHACTCTQDSIGPPGPPGPPGSFGSKGPRGERGNNGAQGPPGTRGEPGSPGS
QGLPGPQGPIGLSIPGESGRTGMKGDAGEPGLPGRSGQPGRNGAQGAVGPQGARGFAGKE
GPPGPRGPAGPMGSPGAPGAPGPTGTQGKPGNSGPVGQPGVKGERGDRGGLASQNMMRSI
ARQVCEQLMNNQMSRVNSLINQIPNGYYNNRAVAGPPGPAGESGNPGPRGENGAQGRPGF
PGAPGTDGRAGERGPPGEQGERGSTGIGKPGSPGPPGAPGPQGQSLTGPPGPPGTRGAPG
PGGRQGHYGARGPAGPPGYCDSSQCAGIPYNGPGYPGPFESGPYQPEPDTYVVPIEREEH
GGSETEIQSPGIVRGQP
NT seq 9054 nt   +upstreamnt  +downstreamnt
atgaggatcaagctgtgccttgcgctggcgactgcctgtgcagcattgctcgcactctca
gtggaggctcaagtcccaccgcccatggacctgaaatataaaattttgtctgaaagcagt
gtgcaaatgacgtggcgacggccacgaagcagaatactggggtacaggctaacagtcaca
ccgaccgatggccaacctcccagggagctcacgttaggtacgcgagtgtccaaaacctca
ataactgacctggttcccgacttggagtacatgatctcgctggttgcctatgaccgttcg
tcagaaagcgttccggtaaaagtgaaacttacaattcagtcaagtcgcacgccaactaga
aagcctaagaaggatgagttcactccagtatgttcctccaatgccaacgctgacctggtt
ttcctggtggatggttcctggagcgtgggaagacccaattttaggaagatcagggagttt
atttattccctcgtctccgccttttccatcggagaggaccagaccagagtgggaatcgtc
cagtacagctctgacaccaggactgagttcagtctagacagatacttcgacaaatctgaa
cttctcagagccatcactaatctgccctacaaaggaggcaacacaatgaccggcgatgcc
attaattacctggtacagaaaacctttgtcgcctctgctggagccagaagatcatatcct
aaagtggcggtgatcatcactgatgggaagtcacaagataccgtgcaggacagcgcccag
gctctacgtgacatcggggtggaagtcttcacactgggcataaagggagctgacctccag
gagctacaagagattgcctccgctcctatcggcaagcatatcttccaggtggcagatttt
gacaacatcaaggatgtccagaccgatatcatcaaacaggtctgctctggagtggaggag
cagatccttgagcttgtgagcggggaggaagtggtggagccagccaacaatttgcaaaca
atcgagattgcgtccaagttcctgaagctggtgtgggatccatcccttggtcaggtcact
gggtacaggttgcagcttatccctttggtgcccggcgtggagaagcaggaagtgagcctg
gactctcaggcgaggatggcagtggttcaaaacctgaacccagggaccgagtaccagatc
aacctatacgccatgaggggcctggcatccagcgaacccatctcgatcctggaaacaact
caggtgatcggagtatcaatcgagtgcacgctgaacgagaactcccaagctgacgtcgtt
ctgttggtggacggctcctacagcatcgggctgagcaacttcgccaaagtcagggatttt
ctggagaccctggtgcaaacattcccagtcgggcccaaccagatccagattggtctggtc
caatacagccgagaccccaacacggaattcaccctcaatacccatagcacccaggcgtcc
gtgctggaagcagttcgcaacttcccctacagggggggctccaccaacactggcagggcc
atgacctatgtgcgcaataaagtcttcgtggtggagaagggggccaggttcaaggtgccc
cgtgtcatggtcctcatcaccgatggcaagtcgtccgatgccttccaggtgccagccgaa
aggctgagggatgccggagtggagatcttcgccgtgggagtcaaggatgccgtgttcagt
gaactggtgaccatcgcctccaaacccgagcactctcatgtctaccaagtggacgacttt
gactccttccagcgggtgtccgccaagctgacccagactctgtgcctcaggatagaggag
gaagcggttgccatcaaagagagagatttcacatcccccagtaatctgcaaacctccgac
gtgacgtccagcagtttccgagtgagctggacaccagtggggccagatgtgcgctcctac
ctgctgaagtacaggatggccttgggtggtcagctctactccatccaggtccccggagag
gaagccagcagagtcctcaccgacctcctgcccgagactgaatacctgatccaagtcatt
gcgcaatacgagaatggcaacagccggccgttggaagggaaggacaccaccctggaagag
aacggattacctcgtaacctactggtgtatgacgaaagcaccaacagtttcaaggtcagg
tgggttgcagctcccggcaatgttctgcactaccgcctcgaatacactccttattccgga
ggcgagaaggaagaggtgacgatcagaggcacagacacatcaaccaccctgcagaacctg
ctcaccaacgccaggtacgacctgagactcagagctgaatatcggacacttgttgggcag
ccactgatcggggaaggaagcaccaaagaagagattggatctcctcggaacctggtgacg
gataacgtctcctcaacctccttcgacatttcctggacggcagccccgggcaatgtccag
cgttaccgggtgacctggaagtcctcagatgatgacgacagcggggaaatagagattccc
ggttacctaaccaccaccaggctgacaaaccttcaaccagaaaccagataccacatcatg
gtcttcgcagcttatagcagtggggaaggagaccctctggagggagacgagaccaccaat
gctactgaggaggccaagagaatgctcgtgacagatgaaaccgtcaacagtttccgagtg
acctggcagcccgcacctggcaaagtgcttcactacagagtcagctaccgtcccgcctcg
gggggaaggaccatcgcgaccaagatcccgccacacctgacctccaccgtcttacgtcgt
ctcagcccgcaaaccacgtatgacgtgaacgtcagtcctatgtacaaacacggagaaggg
aaactacgatttagccagggtaccacagcttcgccttacaaaccaccacaaaacctacaa
acctccgacccccaaaagaccagtttccgagtgacgtgggacccagccccaggggaggtt
cgtggctacaggattacctactacccactggatgatgagcagcaacaggaacaaatggag
ctgggaccctacgacacaaccgtggtgctggaggagctcaaggctgacaccacgtacaaa
gtggccgtgtcggggatgtttcaggacggggagagcctgcctttgctggggcaggagcac
accaccctgtctgaggacagcggcgtgcctccactggggcctccagggatccagtgcagc
accacggctgctgcggacatcctgctgctggtggacggatcctggagtatcggacgcctg
aacttccgacagatccgcagcttcatcggcaaactgatccaggtcttcgatatcagcccc
cagagggtgcagttcggtctggcccagtacagtggagacccgaggactgagtggaacctg
aatgcgcacaaggacaagaagagcttactggctgctgcggcagccttaccttacaaagga
ggaaacacactaacaggcctggctctcagctacatcttacagaacaatttccgggaggat
gcaggagctcggccattcgctcggaagatcggtgtgctgatcacagacggcaagtctcag
gatgatgtgtccatcccctccgaaagtctgcgtgaccttggagtggagctttacgctgtt
ggtatcaagaatgcagatgtcattgagctgcgacagattgccacagaccccgacagcatc
cacatgtacaacgtggcggacttcgctctcctgacggaaatcgtggatgacctgagcagg
aacctgtgcgatagtgtgaagagcggagccaacgtggaagccccgactaacctcgagatg
tctgaagtcacacctggttccttccgggtgacgtgggaccatggagcgagtgtggaccgt
taccgagtggagtaccaacgcgttgcaggaggtcccacagagcaggtgctggtaaacggc
aggaccacgagtgtggttctgactgatctgttcccagaaacacagtacaacgtcaatgtc
tacagccttctcgagggagaagtcagtgagccactgaggggatctgaaaccactctgtcg
attccctccgtgaggaatttcaatcttttcgacgtcacatcgtcttccatgagaatgagg
tgggatccggtgcccgatgcctctggttacctgatccagtatgccccaatcaacgccaat
gtcccagtggggcagaaagaggtgaaggttggccctgaagaggctgatctacctcttacc
gagttattgcctaacactgagtacaccgtatcaatccacaccatgtacggtgacatcgct
ggagacccactaaccaaacaggaagttaccttgccactgagtccacccagaaacatccga
ttctctgacaccactcacagcagcaccagagtgcattgggagcccgccccaggcagggtg
ctgaaatacctgataaaatacagagaagtggacgatccaaccatcaaggaagtggaggtg
aatcgtgcggacacatctgtcttgctgcccaacctgctatctcaaacggaatatcaagtg
tacgttagtgcgatttatgatgatgggccttcggctccagtcgagggaaaagaaagcaca
tcggtggttcctgcgcctatcaacctgcaattctccgaggtgggaacaaagcagttcaga
gtttcctgggaacacggagcgccggatgtggctttgtaccgactggcctggaccccagtc
ggcacgacggacaaaaaagagatgattctgaatggcgatgaaaccaatcaaatgttggag
aatctcacacctgacacgagatatgaggtctccctgacggctatctacccagacgagatg
gagagtgaggacctgatagatactcagagcacaatgccagttgtatccgttgatgaagtt
ggacccccgcggaatctccaggtgtacaatgccaccccttacagcctgacagtgaagtgg
gatcctgccgtgggcagagtgctgcggtacaaggtcacctacaccccgatgtcaggagac
cccatcgagaaaatggtcaaggttgggccaaaacagcacagaattgtgttagagaagctg
agcccagacacaccctactccatcagagttgcctcttcctataaaagaaaggatggagga
cacatgactggcacgggcagaacaaagccgttggcttcagtgcgtaacatcagagtgtac
gatccgaccaccagcaccctgagcgtgaactgggaacccgccgaaggggtggtccgtcag
tacgatgtttactacgtcccaaccactgggggccccgccgaggaaaaggtcactttacca
ggtaacacacgcaatgtagtcctcaggaatctgctgtcagacaccccgtacaagatcagt
gtggtgcctgtgttcaccgagggtgggggagcacggcggtctgccactggacaaacactg
gtgcgcggggcgccccgaaacatccaggtctacaacccgtcccccaacagcctgagtgtg
cggtggatgagtgctcccggtcccgttcagcagtacagagtggtctacgctcctctcact
ggaacccggccttcagaatatactgtggtgcctgcaaataccaatagcctgttgctagag
aggctccagccagatactccttactccgtcaatgtcattgcactctacgcagacggtgaa
ggcggtgaactcagcagcaatggaaaaacattgcctcgcagtggccccaggaacatgcgg
gtatatggacccactaccaacagcctcagtgtcagctgggatcacgcagatgggcctgtg
cagcagtacagagtcatatacgcccccacagtcggagaccctatcgaggaattcatcttt
gttcccgggagaagaaacaatgtggtgctgcagcctctggagacagacacaccataccgt
atcagtgttgtggccatgtacgctgacggggacgggggacagctgaccggggacggacgc
acagtgggtctgctagagcccagtaacctgcgtgtatcagacgaatggtacactcgattc
cgtgtgtcctgggaccctgctcctttgcctgtgcttggatacaagtttatttaccagcca
acaggtgtagatgaaccaaaggagatcttcgttggggatgtgacgacctacacgccacag
aacctgaagcctgggacaacatatgatgtcaaggtctatgccacgtacgactcaggagac
agtgaacccctggttgggcaaggcacaacattgtacctgaatgtgacgggtctgactacc
taccaagtggattgggacagcttctgtatccggtggaacccccacagacaggcctcatct
taccgaatcaagctgcaaccggtggatgctcagcacagcggccgacaggaggtcactgtc
aacggggccgactccagttactgcttctacggcctttcacccaacgctaagtacgatgcg
atggtgtacacacagcttcccaacctggagggaccgggagtcaacgtgcaggagcaaaca
atgatccgcccgaccgtagccccaaccgaaccgccacctcctccaccgccagcaaccatc
cccccggcacatgacgtgtgcaagggtgcgaaggcagatctggtatttttgattgacagc
tcgtggagtatcggggatgataacttcctgaaggttgtgcagtttgtcttcaccacaatt
ggtgccctggacaatatcagcccagcgggaatgcagatttccttcgttcaattcagcgac
gaagcaaagtcagagttcaaactgaacacttatgccgacaaaggacatgtcctgtctgcc
ctgcaaatggtccgctacaaaggcgggaacacaaagacaggtcgagctctgaagtttcta
tatgacgaggtcttcattcattcgaggggcatgaggaagtccgtgcccaaggtgctggtg
gttgtgactgatggacgctctcaggatgaggtcaaacagccagccctggcattgcaggag
gccggttacagtgtgttcgtggttggggtggctgacgtggacttcacagagttgaggaac
atcgcgagcaaacccagtgacaagcatttattcgtggtggacgattttgacgcttttgct
aagatcgaagaccaactcatcacgtttctgtgtgaaaccgcctcctctacttgccccctg
atttacatcaacgggttcacaacgccaggctacaaaatgatggaggctttcaatctgacg
gagacagaagcttcctctctgccaggcgtctccatggaacccggatccttcaatagctat
gtggcttacagacttcacaaggacacctacctcaaccagcccacagtggatattcacccg
gatggcctggcgctcacctacaccatcatgctgatgttccgcatcctgcctgaaaccacc
tcagaaccgttcgctatctggcagatcacaaaccaggactacaaacccgaagtcggtgtg
cttgtcgatggcaacagccagaccctgtcattctttaacaaggatgagagaggcgagtca
cagaccatcacgtttgacagtgacgaagtgaagaagctcttctacgggaatttccacaag
gtccatctcctggtgaaccaagacagcgtgaagctgattgtcgactgccaggaagttgaa
gagaagccggcaaacccacacggaaacatcagcaccgacggctttgagatctttggaaag
ctggtcaagtcccagggagccaagggcagatcagctacatttcagctccagagctttgat
atcatctgcagcctgggctgggccattcgagaccagtgctgtgaccttccatccatgagg
attgaggcaaagtgtcctgccctcccacatgcctgcacctgcactcaagacagcattgga
ccccctgggcccccgggtcctccgggatctttcggaagcaaaggtcccagaggagaaaga
ggcaacaatggagcacagggtccccctggtactcgtggagagcctggcagtccaggttcc
caaggtctcccaggtcctcaaggccccattggattgtccattccaggagagtctggccga
actgggatgaaaggtgatgcaggtgaaccgggattacctggtcgatcgggacagcctgga
cggaatggagcccagggtgccgttggacctcagggcgcaaggggctttgcaggcaaagaa
ggaccaccaggacctcgaggaccagcagggccaatgggatcacctggtgctccgggggct
cctggtccaactggaacgcaaggaaaacccggaaactccggaccagtgggacaaccaggt
gtgaagggagagagaggagatcgggggggactggcttctcaaaacatgatgaggtcgatt
gccagacaagtctgcgaacagctgatgaacaatcagatgagcagagttaactccctgata
aaccaaatccccaacggctactacaacaaccgtgcggtggccggaccaccgggacccgcg
ggagaatcaggtaatcccggcccccgaggggaaaacggagctcaggggcggccaggattc
ccaggagcacctggcacggacggcagagctggagaaagaggtccaccaggagagcagggt
gagagaggcagcacaggcatcggaaagccaggaagcccaggtccaccaggagcaccaggt
ccccaaggacaatcattaaccggacccccaggtcctcctggtacgcgaggtgccccaggc
cccgggggccgacagggacactacggagcgcgaggccccgctgggcctccaggctattgc
gactcctcacagtgtgccggcattccttacaatggccccggctacccaggaccgttcgaa
agcggaccctaccagcccgagcccgacacgtacgttgtgcccatagagagagaggagcac
ggaggttcagaaactgagatacagtcgcccgggattgtccgcggccaaccctga

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (104)   
   KEGG ORTHOLOGY (1)   
   RefGene (100)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (11)   
   Pfam (11)   
All databases (124)   

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