KEGG   Callorhinchus milii (elephant shark): 103190536
Entry
103190536         CDS       T03088                                 
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
cmk  Callorhinchus milii (elephant shark)
Pathway
cmk03015  mRNA surveillance pathway
cmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmk00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103190536
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103190536
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmk03019]
    103190536
   03041 Spliceosome [BR:cmk03041]
    103190536
Messenger RNA biogenesis [BR:cmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103190536
   mRNA cycle factors
    Stress granule specific factors
     103190536
Spliceosome [BR:cmk03041]
 Complex C
  Other components
   Complex C specific factors
    103190536
SSDB
Motif
Pfam: RRM_1 PABP RRM_7 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 103190536
NCBI-ProteinID: XP_007909556
UniProt: V9KGJ1
Position
Unknown
AA seq 632 aa
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEDMDDERLKELFNKFGAFLSVKVMTDDSGRSRGFGFVSFEK
HEDAQKAVDEMNGKEINGRQVYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEHGRSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQSAPPSGYFMTAIPPQAQNR
TAYYPAGQIAQLRPSPRWNPQSVRPQPFQNMPSGMRPTGPRPPTISSMRPTSAQVPRVMS
TQRVANTATQTMGPRPGTTAPGVRSFTQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKVVVPNAAGV
NT seq 1899 nt   +upstreamnt  +downstreamnt
atgaaccccagcgcccccagctaccccatggcctccctctacgtcggcgacctgcacccg
gacgtgaccgaggccatgctgtacgagaagttctcgccggccggccccatcctgtccatc
cgcgtgtgccgggacatgatcacccgccgctcgctcgggtacgcctacgtcaacttccag
cagccggcggacgctgaacgtgctttggacaccatgaatttcgatgtcatcaaaggcaag
cctgttcgtatcatgtggtctcaacgtgacccatctctgcggaaatctggagttggaaac
atcttcatcaagaacctggacaagtccattgataacaaagcgctgtatgacacattctcc
gcatttggcaacatactttcctgcaaggtggtctgtgatgagaatggatctaagggctac
gggtttgtccactttgagacccatgaagcggccgaacgtgccattgagaagatgaacggc
atgcttctcaacgatcgcaaagtgtttgtgggtcgtttcaaatcacgtaaagagcgcgag
gctgaacttggagcaaaagctaaagagttcaccaatgtgtacatcaagaactttggtgaa
gatatggatgacgagaggttgaaagaactcttcaataaatttggagcattcttgagtgtg
aaggtcatgaccgacgatagtggaagatcaaggggctttggttttgtcagtttcgaaaag
cacgaggatgctcagaaggctgtggacgagatgaatggaaaagaaatcaacgggagacag
gtgtacgttggccgtgcccagaagaaagttgagcgacagactgagctgaagcgaaagttt
gagcagatgaaacaggacagaatcacaagataccagggagtcaatctgtacgtcaaaaat
ctggatgacggtattgatgatgagcgtctgcgtaaagaattttcaccattcggaacaatt
acaagtgctaaggtaatgatggaacacggacgcagcaaaggctttgggtttgtttgcttc
tcctccccagaagaggccaccaaggctgtaactgaaatgaatgggcggattgtcagcacg
aagcccttgtatgttgccttggctcagcgcaaagaagaacgacaagctcatctgacaaac
cagtacatgcagaggatggcgagtgtcagagctgtacccaatcctgtgatcaacccgtac
cagtctgctccaccctctggctacttcatgactgccattccccctcaggctcagaaccgt
acagcatattacccagcaggtcagattgctcaactccgaccaagtcctcgctggaatccc
cagagtgtcagaccccaaccattccagaacatgccgagtggcatgcgtccaacaggccct
cgaccaccaaccatcagctcaatgagaccaacctcagcccaggtgccacgtgtcatgagc
acccagagagtcgcaaacacagcaacacagacgatgggtcctcgcccaggcactactgct
cccggtgtccgttcattcacacagtacaagtacgctgctggagttcgcaatcctcaacag
catctcaacgcccagcctcaggtcaccatgcaacagcctgccgttcacgtacaaggccaa
gaacccctgactgcctcgatgctggctgctgcccctccacaggagcagaagcagatgctg
ggtgaacgcctcttccccctgatccagaacatgcatccaagtctggccgggaaaatcaca
ggcatgcttcttgagatcgacaactctgagctgcttcacatgctggagtcccctgagtct
ctgcgctccaaggttgatgaggctgtagcagtgctgcaggcccaccaggctaaagaggct
gctcagaaagtagttgtgccaaatgctgcgggtgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (89)   

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