KEGG   Cucumis melo (muskmelon): 103493756
Entry
103493756         CDS       T03195                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cmo  Cucumis melo (muskmelon)
Pathway
cmo03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cmo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103493756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmo03021]
    103493756
   03036 Chromosome and associated proteins [BR:cmo03036]
    103493756
Transcription machinery [BR:cmo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     103493756
   Coactivators
    SAGA/TFTC/STAGA complex
     103493756
Chromosome and associated proteins [BR:cmo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     103493756
    STAGA complex
     103493756
    TFTC complex
     103493756
    SAGA complex
     103493756
    SLIK complex
     103493756
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 LisH Nup160 PALB2_WD40 WD40_like
Other DBs
NCBI-GeneID: 103493756
NCBI-ProteinID: XP_008452860
UniProt: A0A1S3BVN5
Position
7:complement(773211..780692)
AA seq 674 aa
MDEELIANFVSAYLKKKGFKETEQAFQEELRHNKTNCSSPSSLVDIDVAKHLLSFSEAEN
IPARYLEGYSKLRSWAYNSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARTFFNRFRE
DHEMMHLRDLQKLEGVLSPSHLEEMEFAHSLRQGKVNIKICQYSYEMLLQYLHKTQTTVI
LGIINERINFQVFPGQPSSISDDAELVTLTGSTQDTANQINKKEVHWGLLEDSLEERLEK
AAGLLSDSEKAEGETKDGDVDENKKRTAEGGKPGSSIKKVKKDKTASATGKTLRAEANSA
SMAPRVKPELALPIISTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLNCSSISY
DGALVAGGFSDSSLKVWDMAKLGQQAGNTVLQDENDMSTSDPVTGHTSGKRPYTLFQGHS
GPVHSATFSPIGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASC
SHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVR
IFIGHRSMILSLAMSPDGRFMASGDEDGTIMMWDLSTGRCVTPLIGHTSCVWTLAFSCEG
SLLASGSADCTVKLWDVTSSTKPPRTDENKTGTANRLRSLKTLPTKSTPVYSLRFSRRNL
LFAAGALSKSASTA
NT seq 2025 nt   +upstreamnt  +downstreamnt
atggacgaagaactgatagcgaattttgtgtcagcatacttgaagaagaagggtttcaag
gaaacggaacaagcttttcaggaagagctacgtcataacaagactaattgttcttctcca
tcttctctcgttgacatcgacgtcgctaagcacttactctccttctccgaagcagagaat
attccagctagataccttgaaggatatagcaagcttaggtcctgggcttataactcacta
gatttgtacaagcatgagttgcttcgtgtgctataccctgtgtttatacattgtttcatg
gatcttgtggctaaaggacatattcaagaagctcgaacctttttcaataggttccgtgaa
gaccatgaaatgatgcacctacgagatttacaaaagttggaaggtgtactatctccctct
catttggaggagatggaatttgctcattctcttaggcagggaaaagtcaatataaaaata
tgccagtactcctatgagatgctactgcaatatcttcataagacccaaaccacagtgata
cttgggattatcaatgaacgcatcaacttccaagttttccctggtcagcctagctcaata
tctgatgatgcggaacttgtgacactcacgggaagcacccaggacactgctaatcagata
aataaaaaagaagttcattgggggttactcgaagattctttagaagaacgcttggagaaa
gctgctggtttgctttcagattctgaaaaagcagagggagaaaccaaggatggtgatgta
gatgagaataagaaaagaacagctgagggaggaaagccaggtagttcaattaaaaaagtc
aagaaggacaagactgccagtgcaactgggaaaactctgagggctgaagctaattcagca
tctatggcaccacgagtgaagccagagcttgctttacccataatatcaacagaggtggaa
caatctattcttgaagacttgaggaaccgtgtgcagttgagttccgtagctctgccatca
gtcagcttttataccttcattaatacacacaacggtttaaactgttcatcaatatcatat
gatggagctttagttgcgggtggattctcagactcttctttgaaggtttgggacatggca
aagctaggacaacaagctggaaatactgttttgcaggatgaaaacgatatgtctactagt
gatccagtgacaggtcatacgagtgggaagaggccttatacattatttcaaggtcattct
gggcctgttcactcggccactttcagtcccattggggacttcgttctttcatcctctgca
gacacaactattcgattgtggagcacaaaactaaatgccaatcttgtttgctacaaaggt
cataattacccagtatgggatgttcagtttagtccggttggacattattttgctagttgc
tcacatgatcgaactgcaaggatctggtctatggatagaattcaacctttaaggatcatg
gcaggacatctatctgatgtggattgtgttcaatggcatgccaactgcaactacattgca
actggctcgagtgacaaaactgttagattgtgggatgtccagagtggggaatgtgttcga
attttcattggccacaggagcatgattttgtcgttggcaatgtcacctgacggtcggttc
atggcatctggtgatgaagacggtacgattatgatgtgggacctatcaacgggtcgctgt
gttacacctttgattggacacacatcatgcgtttggactcttgctttcagttgtgagggg
tctctcctcgcctccggttctgccgactgcacagtgaaattatgggacgtaacttcaagc
accaagccaccaagaacagatgaaaacaaaactggaactgccaatagacttagatccttg
aagactctaccaaccaagtcgactccggtttacagtttgcggttctctcggaggaatctc
ttatttgcagctggggctctctcaaaaagtgcatcaactgcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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