KEGG   Cucurbita moschata (crookneck pumpkin): 111436784
Entry
111436784         CDS       T05248                                 
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
  KO
K18422  helicase MOV-10 [EC:3.6.4.13]
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111436784
   03036 Chromosome and associated proteins [BR:cmos03036]
    111436784
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     111436784
Chromosome and associated proteins [BR:cmos03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     111436784
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 AAA_19 ResIII UvrD-helicase AAA_22 Helicase_RecD DEAD SLFN-g3_helicase AAA_16 LTD PhoH AAA AAA_5 Mov-10_helical
Other DBs
NCBI-GeneID: 111436784
NCBI-ProteinID: XP_022930285
UniProt: A0A6J1EWJ1
Position
Unknown
AA seq 896 aa
MGTIGDNWGDDCSVIKDRGEISYIDYEDDKSVCSYNPIEEGPIIISVPFAFVNGKPQSVF
VGESVADAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPSANANIEVVQAFLESFS
LEDRMIHPGETLTVWLSCKPKEIGLHTTVVHFDVGNERIERVSFLLADDKISQSLASRKP
YSRDRKKRHEVADSYIPGSRPIRTQGRGFKNFLPHYDIPRRIRDELNRKETPSAVREGLK
RDTYVPYFMTLLNMEEIQLEEDMRAYDMERVTMKRKGHHFLCLEVPGLAERRPSLVHGDF
ILAKMPSGHANDTVNAYQVLGYIHHVEADEVYLKFAPEFHVNHRDFNLYNVQFTYNRINM
RRFYQAIDAADSLAKEFLFPYEFSDRRVIKTNPLVPITQNINEEQMRCVQMILGCRGAPP
YLVHGPPGTGKTQTLVEAILQLYTTRKNARILVCAPSNSAADHILEKLLSEEGVEIRDND
VFRLNASSRQYEEIKPDHLRFCFFDEQIFKCPPHSALVRYRIIVSTYTSTSLLYAEDIKR
GHFSHIFLDEAGQASEPETIIPISNLCLRKTVVVLAGDPMQLGPVIYSKEAEIYGLSKSY
LERLFECEYYCTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDEKSFLTDSADI
LEVLPSKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEVIKKLTAGGNLVDENIGVIT
PYRQQVIKIRKALDSLDMVDIKVGSVEQFQGQEKQVIIVSTVRSTIKHNEFDRTYCLGFL
SNPRRFNVAITRAISLLVIIGNPHIIYQDVYWSKLLWQCVDKDSYQGCSLPERQDPTDEE
LPCNNEEGPCSGFEGAGKNHEGQSSGFEGADQNQDLPEMEFSRPVVNEDEWSDGWK
NT seq 2691 nt   +upstreamnt  +downstreamnt
atgggtaccattggtgataattggggtgatgattgttctgtcatcaaagacagaggagag
atttcctacatcgactatgaagatgataaatctgtttgcagctacaatcctattgaggaa
ggtccaattatcatttcagtgccatttgcttttgtgaatggcaaaccacaatcagttttt
gtaggagaatcagtggcagatgcaattacgatcaagaacaccaccgatgaatcggtggac
ctatgggctgttaatatttatgcatctaatcccgagaactcgtttacgctctctctaatg
gagcccccttcggcaaatgcgaacatagaagttgtacaagcttttttggagtccttttcg
ttggaggatagaatgatccatccgggcgagactcttactgtatggctgtcttgcaaaccg
aaagaaattggcttgcacacgactgttgtgcattttgatgttggcaatgagagaatagaa
cgcgtttcttttctgttagcagatgataagatttcccagtcattggcttctaggaagccg
tattcaagagatagaaaaaagaggcacgaggtagcagactcttatattcctggctcacgt
cccattagaacgcaaggtcgaggattcaaaaattttcttccccattatgatatcccaaga
agaattagagatgaacttaacagaaaggagactcctagtgctgttagggaaggacttaaa
agagatacctacgttccctactttatgactttgttgaacatggaagaaatacaattggag
gaagacatgagagcttacgatatggaacgtgtaactatgaaaagaaagggacatcatttt
ttgtgccttgaggttccagggcttgctgagagaaggccttcacttgtccatggagacttt
attcttgccaagatgccttctggacatgcaaatgacacggttaacgcttatcaggtcttg
ggctatattcatcacgtcgaggctgatgaggtttacctaaaatttgctccagaatttcac
gttaaccacagagacttcaatctatacaatgtccagtttacctataacagaattaacatg
aggaggttctatcaggctattgatgctgcagatagtttggcaaaggagtttctattccca
tatgagttttcggatagaagagttatcaagactaatccgctggtgcctataactcaaaat
atcaacgaggaacaaatgcgttgtgttcagatgatccttggttgcagaggagcaccacct
tatttagttcatggacctcctggtactggtaagactcagaccttggtggaagctatcctt
caactctacacaactagaaagaatgctcgtattcttgtttgtgctccttcaaatagtgct
gcagaccacatactggagaaactcctcagtgaggagggtgttgaaattcgtgataatgat
gttttcaggcttaatgcaagctcacggcaatatgaggaaatcaagcctgatcaccttcgt
ttttgtttctttgatgagcaaattttcaagtgtcctccacacagtgcccttgtgcgctat
aggattattgtgtcaacttatacaagtacttcccttctttatgcggaagatatcaagcgt
ggccacttctctcacattttcttagatgaggctggccaagcttcagagccagaaacgata
attcctatatccaacctttgtcttaggaaaacagtcgttgttcttgctggtgatcccatg
caattaggtccagtgatttactctaaagaagcagaaatttatggattgagtaaatcatat
ttggaaaggctttttgaatgtgaatattactgcactggggatgaaaactatgtaataaag
ttgttaagaaactatagatgtcatccggatatcttacatcttccttctacattgttctat
ggtggtgaattaattgcatgtaaagatgaaaaaagtttcctcacggattcagcagatatc
cttgaagtacttcctagtaaggagtttcctgttcttttctttggtatccaaggttgtgat
gagagggaaggcaacaatccatcatggttcaaccgaattgaggttagcaaggtggtagag
gttataaagaaactgactgctggtggaaatctggtcgacgaaaatattggggtcataacg
ccgtatcgacaacaagtgattaaaataaggaaagcccttgatagcctggatatggttgat
ataaaggtcggtagtgtagaacagtttcaaggacaagagaagcaagtgattattgtttct
actgttcgatcaacgatcaaacataacgagtttgacagaacctactgtttggggttttta
agtaatccaagaaggtttaatgtggctattacccgggcgatatctcttctggttataatt
ggcaatccccatataatctatcaggatgtgtattggagcaagctattatggcagtgtgtt
gacaaagattcatatcaaggttgctccctccctgaaaggcaggatcccacagatgaggaa
cttccatgcaataacgaagagggaccatgttcaggatttgaaggagcagggaagaatcat
gagggacaaagttcaggatttgaaggagctgaccagaatcaagatctgccggagatggaa
ttttcgagaccggttgttaatgaagatgaatggtctgatggttggaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (17)   
   Pfam (17)   
All databases (35)   

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