KEGG   Cucurbita moschata (crookneck pumpkin): 111442734
Entry
111442734         CDS       T05248                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03018  RNA degradation
cmos03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111442734
  09123 Folding, sorting and degradation
   03018 RNA degradation
    111442734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmos03019]
    111442734
   03041 Spliceosome [BR:cmos03041]
    111442734
Messenger RNA biogenesis [BR:cmos03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     111442734
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     111442734
Spliceosome [BR:cmos03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    111442734
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 111442734
NCBI-ProteinID: XP_022936003
UniProt: A0A6J1FCD9
Position
Unknown
AA seq 149 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPGGRPSKGMGRGFDD
GAKAASGGRGKGSSGGKLGANRVGGRGRG
NT seq 450 nt   +upstreamnt  +downstreamnt
atgcttcccctttctcttctaaagactgctcaagggcatcccatgttggtggaattgaaa
aatggtgagacttacaatggccatttggttaactgcgatacatggatgaacattcatctt
cgggaagtcatctgtacttctaaagatggtgaccggttttggcgaatgcctgaatgttat
attcgtggtaatacaatcaagtatttgcgagttccagatgaggttattgataaagttcag
gaagaaaccaaaagccgtacagataggaaacctccaggtgtagggcgtgggagaggaaga
gggcgtgaggatggtcctggtggaagaccatctaaaggaatggggcgaggcttcgatgac
ggtgctaaagctgcttctggaggccgtggaaagggtagctccggtggaaaactcggtgcc
aacagagttggaggcaggggccgagggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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