KEGG   Cucurbita moschata (crookneck pumpkin): 111444867
Entry
111444867         CDS       T05248                                 
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03022  Basal transcription factors
cmos03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    111444867
  09124 Replication and repair
   03420 Nucleotide excision repair
    111444867
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmos03021]
    111444867
   03400 DNA repair and recombination proteins [BR:cmos03400]
    111444867
Transcription machinery [BR:cmos03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     111444867
DNA repair and recombination proteins [BR:cmos03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     111444867
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 111444867
NCBI-ProteinID: XP_022938728
UniProt: A0A6J1FJQ6
Position
Unknown
AA seq 297 aa
MASAPSKLYADDVSLLVVLLDTNPFFWSTYSLPFSKFLSHVLAFLNSILVLNQLNEVVVI
GTGYASCKYLYNSSSYSNRSLEDGRMPALCTRLLNNLEEFMIGDEQSIEEDPRGGTMSSL
LSGSLSMALCYIQKVFRSGSLHPHPRILCLQGSPDGPEQYVAIMNSIFSAQRSMVPIDSC
YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFATDLHSRTFLQLPKSVGVDFRA
SCFCHKKTIDMGFVCSVCLSIFCKHHKKCSTCGSVFGETPVAVDSVVSKLKRKTPET
NT seq 894 nt   +upstreamnt  +downstreamnt
atggcctctgctccttcgaagctctatgcagatgatgttagcctgttagtggttttactg
gatacaaatccatttttctggagcacatattctctcccattctccaagtttctctctcat
gtacttgcttttctgaactccattttagttctgaatcaacttaatgaggttgtggtcatt
ggtaccggatatgcttcatgcaagtatctatacaactcgtcttcttactcaaatcgtagc
cttgaagatggtagaatgcctgcactttgcactcgtttattgaataatttggaggaattc
atgattggggatgagcagtcaatcgaggaagatcccagaggagggaccatgtcttcactt
ctttctggatcgctctccatggctttgtgttatatacagaaagttttccgatctggatct
ctccatccccatcctcggatcctttgcttgcagggatccccagatggacctgaacaatat
gttgcaatcatgaattccatcttttctgctcagcgttcaatggttcctatagattcatgt
tacattggttcgcacaattctgcatttcttcagcaggcttcttacataactggtggcgtt
tatctgaagcctcagcaaatggatgggctgtttcagtatctctctacagtgtttgcgact
gatttgcattcccggaccttcttacagcttccgaagtctgttggtgtcgattttcgtgca
tcgtgtttctgccacaaaaaaacaattgatatgggctttgtctgttctgtttgtttatct
atattctgcaagcatcacaagaaatgttctacctgtgggtcagtttttggtgagacccca
gtagctgtcgattcagtagtgtcgaaactgaagagaaaaactccagaaacatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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