KEGG   Cucurbita moschata (crookneck pumpkin): 111456230
Entry
111456230         CDS       T05248                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
cmos  Cucurbita moschata (crookneck pumpkin)
Pathway
cmos03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cmos00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111456230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmos03021]
    111456230
Enzymes [BR:cmos01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     111456230
Transcription machinery [BR:cmos03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     111456230
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 111456230
NCBI-ProteinID: XP_022953816
UniProt: A0A6J1GP51
Position
Unknown
AA seq 1983 aa
MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCES
CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNKFPSKNVGFAER
LLSCCEDASQVSIREAKKSDGATYLQLKVPSRTSLREGFWDFLERYGFRYGDNLTRTLLP
CEVKEMLKKIPNETRKKLAGKGYYPQDGYVLQYLPVPPNCLSVPEISDGVTIMSSDPAVL
MLKKVLKQVEIIKGSRSGAPNFEAHEVEANDLQMAVDQYLQVRGTVKASRGIDARYGVNK
ELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYKLVNEIGVPFEVAQRITFEERVSV
HNIKYLQELVDKKLCLTYRDGSSAYSLREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPT
THKHSLQALRVYLHDDHTVKINPLICGPLGADFDGDCIHLFYPQSIAAKAEVLGLFSVEK
QLLSSHSGNLNLQLANDSLLSLKMMFRKYFFGKAAAQQLAMFVTSSLPPPALLGVRSNSL
HWTALQILQTVLPSCFDCHGDSYLIKNSDFLKFDFDRDAMPSLINEIVTSIFFQKGPEEV
MRFFDSLQPLLMEHVFSEGFSVSLDDYSMPMAFLQALQKNIQVISPLLYQLRSSFNELVE
LQLENHIRSVKVPFTNFILKLSSLGKLFDSKSDAAINKVVQQIGFLGLQLSDKGKFYSKT
LIDDVASLFHNRYSSDKNDYPSAEFGLVKGCFFHGLDPYEEMVHSISTREVMVRSSRGLT
EPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQLEYGIKAGMMKPYGLFPPGEPVGVLA
ATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVGFKNEPVDRRVILYLNNCDCGRKHCN
ENAAYVVKSHLKKVTLKDVAMDFMIEYNRQPTPSALGPGLVGHVHLNQVLLEELRINMAD
VLRRCQETISSFKKKKKKLAPALRFFISEHCSFHQRNGEERTDMPCLTFWLETRDVHLER
TSHILADVVFPLLSETIIKGDPRISSANVIWISSDSTSWERNPSRWQDGELALDVCLEKS
AVKEDGDAWRNVLDCCLPIIHLIDTRRSVPYAIKQVQKLLGISCAFDQTIQRLSKSVSMV
SKGVLGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRRCFERAAT
KCHKDSLSSIVASCSWGKHVAVGTGSKFDILWDQKELGSKQADVVDVYNFLHMVRSGKSE
ESTSACLGVEIDDLMVEDEYGELTLSPEPFSTSEKPVFEDSAEFEHCLDNHSLGAASAGG
GQWESNENSKTSQDNDWSGWGTKVDPDVTTSKSGWDTTPSWGNKATKASNDNGWSTKEVE
RDSFTSTKNTPKTGGWDSAATWGMKTKDVDSFKEGETAPEKSNVWSGLQSNKAETQDAFH
KKVEIASKSGGWDDKAWSRGTSKTEDNWSSRAKDKAEPWLAHVQEVSPNSNGWGSAGGWG
KNAGDGDESEAGRNDGQASMDLEKVSDRWDGRDVQRTGDSKDNFQSKVVEHGDSVAINHS
WDQQKPPEVSQGEYGNDAWGQQKSWEVKKPSHVNNESNRHGWGSRIELNEGPNHECDQVT
NDSGGWDSQKQMDKPWEKQKSTEASQSWGSQKDSQSWGSQKDSQSWGSQKDSQSWGSQKD
SQSWGTQKDSQSWGSQKDSQSWGSLKDSQSQGSWGQLQRTPKEFSQESQDDSNKHFDNQK
PPETSSGWEQQKSPEVSHGWGSHIDSSDSTSSHGWDNKKNQGSKSWGGNVGEWKNRKNRP
PKSPGMTSDDANLRGLYTASGQRLDMFTTEEQDILADIEPIMQSIRKIMHQSGYNDGDPL
SAEDQSFILQSVFNFHPDKAVKMGAGIDHFMVSRHSSFQESRCFYVVSTDGHKEDFSYRK
CLDNFIKGKYPDMAEMFVAKYFRKPRSGKPRDRNTASEENENKNVGGELTPIPEEAENGS
QQQ
NT seq 5952 nt   +upstreamnt  +downstreamnt
atggaggaggcaccctgttgctcctctattttagatggggaaatagttggaataagattt
gcattggccaatggtcaagaaatttgtattgcagctattagtgattgccctattacccat
gctagtcagctctcaaatccatttcttggtttaccaattgaatatggtaaatgtgaatca
tgtggtacttctgaacctgggaagtgtgaaggccattttggatatatcgaattaccaatt
cccatttatcatcccaatcacattacggaattgaagaagatgttaagcttgctctgtttg
aagtgcttgaaaatgaaaaaaaacaagtttccctcgaagaatgttggttttgctgaaaga
ttgttatcatgctgtgaggatgcttcgcaagtttctattcgagaggcaaaaaagtcagat
ggtgctacttacttgcaattaaaagtaccatcaaggacatcactacgagaaggattttgg
gatttcttagaaagatatggttttcgttatggtgataatctcactcgaactttgctccct
tgcgaggtgaaggaaatgctaaagaaaattcctaatgagaccagaaaaaagcttgctggc
aaaggctattatcctcaggatggatatgtcttgcaatatttaccagtccctcccaactgt
ttgtctgtaccagaaatttctgatggtgttacgatcatgtcttcggatccagctgtttta
atgctcaagaaagttcttaagcaagtggaaatcatcaaaggttctaggtctggtgctcca
aactttgaagctcatgaagtagaagctaatgacttgcaaatggccgttgatcaatatctc
caagttagggggactgttaaggcatctcgtggcatagatgcaagatatggtgtaaataaa
gagttaaatgatccttccactaaagcctggcttgagaaaatgagaactctgtttattcgg
aaaggctctggtttctcttcccgcagtgtgattaccggggatgcttacaaactagttaat
gaaattggtgtgccttttgaagttgcccaaaggatcacgttcgaggagagagttagtgtg
cataacataaaatatttacaggaactggtggataagaaattatgtttaacctatagagat
ggttcttctgcctattcacttcgtgaaggttcaatgggccatacatatctgaaacctggt
caaatagttcatcggcggatcatggatggagacattgttttcattaatcgaccgccaact
actcataaacattctttgcaagccctgagggtgtatctgcacgatgaccatacagtcaag
atcaaccctctaatttgtggacccttgggtgcagattttgatggtgattgtattcaccta
ttttatccccagtccattgcagcaaaagctgaggtgttgggacttttctctgtggaaaag
cagctgcttagctctcatagtgggaaccttaatttgcagttggctaatgattcattgttg
tctctcaagatgatgttcaggaaatatttcttcggcaaagctgcagcgcagcaattggct
atgtttgttacttcatctctgccacctcctgccttgttgggagttcgttctaatagtctt
cattggactgctttgcagatacttcaaactgtgttgccttcttgttttgactgtcatggg
gatagttacttgattaaaaacagtgattttcttaagtttgactttgatagagatgctatg
ccatcattaattaatgaaattgtgacgtcaattttttttcagaagggtcctgaagaggtt
atgagattttttgattctttacagccgttattgatggaacatgtattttcagaaggtttc
agtgtaagcttggatgattattccatgcccatggcatttttacaagctcttcaaaagaat
attcaagtaatatcacctttgctgtatcagttaaggtcatccttcaatgagctggtagag
ttgcagttagagaatcacatacgatcggtcaaagttccatttacgaactttatcttaaag
ttatcttcattggggaagttatttgactccaaaagtgatgctgctattaacaaggtggtt
caacaaattgggtttcttggattgcagctttctgacaaggggaaattttattccaagaca
ttgatagatgatgtagcctctctgtttcacaatcgatattcttctgataaaaatgactac
ccttctgctgaatttggattggtcaaaggctgttttttccatggattagatccgtacgag
gaaatggtccattcaatttccacaagagaggtaatggtacgttcatcgagagggcttact
gaacctggaactcttttcaagaacttgatggccatccttcgagatgttgtaatttgttat
gacggtactgtgaggaatgtttgtagcaattccatcattcaacttgagtatggaataaag
gccggaatgatgaagccttatggtttattccctcctggtgaaccggttggtgttctagca
gctactgccatgtcaactcctgcttataaggcagttcttgattctactcccagtagcaat
tcctcatgggacatgatgaaggaaattcttctttgtaaggtcggttttaagaacgagcct
gtagatcgtcgggtgatattatatctaaacaactgtgattgtggtagaaaacattgcaat
gaaaatgcagcatatgtggttaagagtcatcttaagaaagtcacgcttaaagatgtcgca
atggatttcatgatagaatataacagacaaccaactccctcagcgcttggtccagggctt
gtcggacatgtgcatcttaaccaggtgctgctggaagaattgaggataaacatggctgac
gttttacgaagatgccaagagactatcagttcttttaaaaagaagaagaagaaacttgct
cctgcattacgattctttatcagtgaacactgctcttttcatcaacggaatggagaagag
aggactgatatgccatgtttaacattctggcttgagaccagagatgttcatttggagaga
acttcccacatccttgctgacgtagtctttccactgctttcagaaacaatcatcaagggt
gaccctcggatcagttctgcaaacgtgatctggattagttcagattcaacaagttgggaa
agaaatccttccaggtggcaggatggcgaactagccttggatgtttgtctagaaaaatcg
gccgtgaaagaagatggtgatgcatggaggaacgtgctggactgctgccttcctataatt
catttgattgatactagacgatctgttccttatgcaattaaacaagttcaaaaactgctt
ggcatttcgtgcgcttttgatcaaacgattcagcgactttcgaagtcggtgtcaatggtt
tcaaaaggtgtactcggagatcatcttattctgctggcgaacagtatgacatgcacagga
aatatgattggcttcaattcaggtggatataaagcattatctcgtgcgttgaatatccaa
gtaccgtttacagaagcaacgttgtttacaccaagaagatgttttgagagagctgctaca
aaatgtcataaagattctttatcaagcatagtggcatcttgttcttggggtaaacatgtt
gctgttggtactggatcaaagtttgacatcctctgggaccaaaaagagttaggatcgaaa
caagctgatgttgtagatgtttataactttttacacatggtgagaagtggtaaatcggaa
gaatcaacgtctgcatgtctaggtgtagagatcgacgatctaatggttgaagatgaatat
ggcgagttgactctgtccccggagcccttctctacttctgagaagccagtttttgaagac
agtgctgaatttgaacactgtttggataatcattctcttggtgctgcttccgctggtggt
gggcagtgggaaagtaatgaaaatagtaagacatcccaagacaatgactggtctggttgg
gggacaaaagttgaccctgatgtgaccacttcaaaatctggttgggatactacaccaagc
tggggaaataaggctactaaggcttcaaatgacaatggctggtctacaaaagaagtcgaa
cgagattcctttacttccacgaagaatactccaaaaactggaggttgggatagtgcagct
acatgggggatgaaaactaaagatgtcgatagctttaaagaaggagaaacagcgcccgaa
aaatcaaatgtgtggtctggtttgcagagcaataaagctgaaacacaagacgccttccat
aaaaaggtcgagatagcgtctaaatctggtggatgggatgataaggcttggtcaagagga
acttctaaaacagaagataattggtctagtcgggctaaggataaagctgaaccatggctg
gcccatgtgcaagaagtttctcccaatagcaatggttggggttctgcagggggttggggg
aagaatgctggagatggtgatgaatctgaagcaggccggaatgatggccaggcatcaatg
gacctagagaaggtgtctgataggtgggatggccgggacgttcaaaggactggtgactcg
aaggataactttcaatccaaagtggtggagcatggtgattcagttgccatcaatcattct
tgggatcaacagaaaccacccgaggtatcccagggagagtacggtaacgacgcatggggg
caacagaaatcatgggaagttaaaaaaccttcacatgttaacaatgaatcaaatcgacat
ggctggggatcccgaatcgagttaaatgaaggaccgaatcatgagtgtgatcaagttacc
aatgattcaggaggttgggactctcagaagcagatggataagccatgggagaagcagaag
tctacggaggcttcacaaagttggggctcccagaaggactcacaaagctggggctcccag
aaggactcgcaaagctggggctcccagaaggactcgcaaagctggggctcccagaaggac
tcacaaagctggggcacccagaaggactcacaaagctggggctcccagaaggactcgcaa
agttggggctccctgaaggactcacagtcacagggttcgtgggggcagctccagagaaca
cctaaagagttcagtcaggaatctcaggatgattcaaataaacattttgataatcagaaa
cctccagaaacttcatcaggttgggaacaacaaaaatcgccagaagtttcacatggttgg
ggctctcatattgactcgagcgattcgacaagttcacatggatgggataataagaagaat
caaggatcaaaaagttggggaggaaacgtcggggagtggaaaaataggaagaaccgtcct
ccaaaatctcctggaatgacgagcgacgatgctaatttacgcggattatataccgcatca
ggacaacggttggatatgtttacaaccgaagaacaagatattcttgctgacatcgaacct
ataatgcaatccatcagaaaaataatgcatcaatctgggtacaacgatggggatcctctg
tctgctgaagatcaatccttcatacttcaaagtgtattcaacttccatcctgacaaagct
gtaaaaatgggagctggaattgaccacttcatggttagtcggcacagtagttttcaggaa
agcaggtgcttttacgttgtatcaaccgacggtcataaagaggacttttcatatcgcaaa
tgcctcgacaatttcattaaaggcaagtatcccgacatggctgaaatgttcgtggcgaag
tacttcaggaagcctcgttcaggtaaaccccgagatcgtaacacagcatcagaggaaaac
gagaacaaaaacgtcggcggagagctgacgccgatcccagaagaagctgaaaatggcagc
caacaacagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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