KEGG   Chamaesiphon minutus: Cha6605_1218
Entry
Cha6605_1218      CDS       T02414                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
cmp  Chamaesiphon minutus
Pathway
cmp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    Cha6605_1218
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cha6605_1218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmp03021]
    Cha6605_1218
   03400 DNA repair and recombination proteins [BR:cmp03400]
    Cha6605_1218
Enzymes [BR:cmp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Cha6605_1218
Transcription machinery [BR:cmp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     Cha6605_1218
DNA repair and recombination proteins [BR:cmp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     Cha6605_1218
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom
Other DBs
NCBI-ProteinID: AFY92432
UniProt: K9UBF9
Position
1295143..1296813
AA seq 556 aa
MSYIPDNALIIQSDRSVLLEVHSPQANAARDAIAPFAELVKSPEHIHTYQISPLSIWNAR
AAGMPVVEMIAALRSYSKYPMPDAIAQELETLGSRYGLTTIDRVDDTLLLTMVDLPLAEL
LSRDRDVSQFLAQRRSDLVFEVDPAHRGILKQALLIAGYPAEDLAGYVDGDRLEVELRET
CRSGQPFGLRDYQTEAVAAFYQAGLARGGSGTIVLPCGAGKTMVGLAAIATIQENTLILT
SSLTSVRQWQRELLDKTNLAPNSIAEYSGESKQTAPITLATYQILSYRSSKTDEFPHFQL
FSARAWGLIIYDEVHLLPAPIFRITAQLQARRRLGLTATLIREDGKEGDVFALIGPKRYD
VPWRELEGQGFIAPAECTEIRVAQDPAGQMEYALAAKRHQFRIAAENPRKNTVVQSLLAK
LPGHRILIIGEYLDQLNALAKLTGLPLVTGKTCQPERDRLYDEFRAGKITGLILSRVGNF
ALDLPDADVLIQVSGKYGSRQEEAQRLGRVLRPKSDGRAAQFYTLVSLRTCEEDFARHRQ
LFLSEQGYLYRIESNG
NT seq 1671 nt   +upstreamnt  +downstreamnt
atgtcctacattccagataatgccctaattattcaaagcgatcgatctgtattgctcgaa
gttcattcaccccaggcaaatgcagcgcgagatgcgattgctccattcgcagaattagtc
aaaagtcccgaacatattcatacttatcaaatttcacccttgagcatttggaatgctagg
gcggcggggatgcctgtggtggagatgattgccgcattgcgatcgtatagcaagtatccc
atgccagacgcgatcgcgcaggaactagagacgttggggagtcggtatggattgacgaca
atcgatcgggtagacgatacactcctactgacgatggtagatttacccctggcggaatta
ctcagtcgagatcgagatgtttcccagttccttgcccagcggcgcagcgatctggtattt
gaagtcgatcccgcccatcgggggatactcaagcaagccttgttaattgccggatatccg
gcagaagatttggcgggatatgtcgatggtgacaggctggaagttgaattacgagagact
tgtcgatcgggacaaccgtttgggttacgtgactatcaaactgaagctgtagctgcattt
taccaggcaggattggcacggggtgggagtggcacgatcgttttaccttgtggggcgggc
aaaacgatggtaggattggcggcgatcgccacgatccaggaaaatacgctcatcttgacg
agtagcttaacctccgtgcgccagtggcagcgagaattgctggataagaccaatttagca
cccaactcgatcgccgaatatagcggcgagagcaaacaaactgccccgattaccctggct
acctatcagattttgagctatcgctcaagtaaaaccgatgaatttccccattttcaactc
tttagtgccagagcttggggcttgattatctatgacgaggtacatttactccccgcacca
atttttcggattaccgcccaattgcaagctcggcggcgattgggattgactgcaacacta
attcgggaagatggaaaagaaggcgatgtctttgccctaatcggcccgaaacgctatgat
gtcccctggcgggaacttgaagggcaggggtttattgctccagccgaatgtacagaaatt
cgagtcgcccaagatccggctggacaaatggaatacgccctcgctgccaaaagacatcaa
tttcgcatcgctgccgaaaatccgcgcaaaaatacggtagtgcagtctctcttggcaaaa
ttacccggacatcgcattttaatcatcggcgagtatttagaccaattaaatgcgttagcc
aagctaactggtttaccactagtgacaggcaaaacctgccaaccggaacgcgatcgactg
tatgatgaatttcgggctgggaagattacaggtttaatcctctcacgggtgggtaacttt
gccttggatctgcccgatgccgatgtgttaattcaagtctccggtaaatatggctcgcgc
caggaggaagcccaacggttggggcgggtattgcggcctaaatctgatggtcgggccgcg
caattttataccttagtttcactccgtacctgcgaggaggatttcgctcgccaccgccaa
ctgtttttgtcagaacaaggctacctctatcggatcgaatctaacggataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (25)   

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