KEGG   Chamaesiphon minutus: Cha6605_5213
Entry
Cha6605_5213      CDS       T02414                                 
Name
(GenBank) excinuclease ABC, A subunit
  KO
K03701  excinuclease ABC subunit A
Organism
cmp  Chamaesiphon minutus
Pathway
cmp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cmp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cha6605_5213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cmp03400]
    Cha6605_5213
DNA repair and recombination proteins [BR:cmp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cha6605_5213
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Cha6605_5213
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N AAA_16 RsgA_GTPase AAA_29 nSTAND1 AAA_21 nSTAND3 AAA_23 NACHT AAA_33 AAA_22 AAA_18 Viral_helicase1 DnaJ_CXXCXGXG MeaB ATPase cobW RNA_helicase MMR_HSR1 NB-ARC ExoX-like_C FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: AFY96103
UniProt: K9UN53
Position
5502220..5505072
AA seq 950 aa
MSSTDRDTIRIRGAKQHNLKNISLELPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVE
SLSAYARQFLGQLDKPDVDAIEGLSPAISIDQKSTSNNPRSTVGTVTEIYDYFRLLYGRA
GTPHCPQCDRSIAPQTIDEMSDRIRALPERTKFQILAPIVRGKKGTHQKVISSLASEGFV
RVRVNGEIRELADRIVLDKNQHHTIEIVVDRLVNKEGIESRLSDSLTTCLRHGEGIAVIS
IITDEGAETNPDLPTELVFSEKFACPEHGAVMEELSPRLFSFNSPYGACPACHGIGSSRT
FDPDLIIPDPSAAIYHAIAPWSDKDNSYYLSLLYSLGQAAGFALDTPWQKLTPEQRSLIL
EGRDEPIWMEDIGENRRFRGVIKILDRQYNDASELQKQKLEQYLTDRPCEACGGKRLKAE
AQSVKLGQYGILDFTSAAIDECLDRLDRLVLTEKQLKIGELVLKEITARLQFLLNVGLDY
LTLDRAAMTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNGRLLNTLTKLRDL
GNTLIVVEHDEDTIRAADHLVDIGPGAGVHGGSIVVEGDLKALLESEDSITGAYLSGRIG
IETPAQRREGNGRSLILKNANRNNLKHLDVDFPLGKLVSITGVSGSGKSTLVNELLHPAL
QHHLTKRVPFPKDVDELQGISAIDKVIIIDQSPIGRTPRSNPVTYTGVFDTIREVFTQTI
EAKTRGYKAGQFSFNVKGGRCEACSGQGVNIIEMNFLPDVYVQCDVCKGERYNRETLQVK
YKGKSIADVLNMTVEEGLGFFENIPRAATRLQTLVDVGLGYVKLGQTAPTLSGGEAQRVK
LATELSKRATGKTLYLIDEPTTGLSFYDVHKLLDVLQRLVDKGNSIIVIEHNLDVIRCSD
WTIDLGPEGGNKGGELVAVGTPEQVAKNPKSHTGKYLKQVLKQHSATVKA
NT seq 2853 nt   +upstreamnt  +downstreamnt
atgtcttcaaccgaccgagacactattcgcatccgtggtgccaaacaacacaacctcaag
aatattagtttagagctaccgcgcgatcgcttaatcgtgtttacaggtgtctctggttcg
ggtaaatcgtccttagcattcgataccatctttgccgagggacagcggcgatatgtagag
tcgctgagtgcttatgcgcggcaatttttgggacaattggataaaccggatgtcgatgcg
atcgagggtttgagtccggcaatctcgatcgatcaaaagtctacttctaataatcctcga
tcgactgtcggcacggtcaccgaaatttacgattattttcggttattatacggtcgcgcg
ggtacgccccattgtccgcagtgcgatcgatcgattgccccgcaaaccattgatgaaatg
agcgacagaattcgcgcgctccccgaacgaactaagttccagatcttagctccgatcgtc
cgaggtaagaaagggacgcatcagaaagtaatatctagtctggcatctgaaggcttcgtg
cgggtgcgggtaaatggcgagattcgcgaattagccgatcgcattgtcttagataaaaat
caacatcatacaatcgaaattgtggtcgatcgattggtgaataaagaaggtatcgaatcg
cgactgtcggattctttaactacttgtttgcggcatggggaagggattgccgttatttca
attattaccgacgaaggtgcagaaacaaatccagatttaccgacagaattagtcttttct
gagaaatttgcgtgccccgaacatggcgcggtaatggaagaattatcgccgcgattgttc
tcatttaactctccatacggggcttgtccggcttgtcacggcatcggtagctcgcgcacc
ttcgatccagacctaattattcccgatccgtcagcggctatttatcacgcgatcgcgcct
tggtccgacaaggataattcttattatttatctctattatatagtttgggtcaagccgcc
ggatttgccctcgatactccctggcaaaaactcactcccgaacaacgatcgttaatttta
gagggtcgggacgagccgatttggatggaagatatcggcgaaaatcgtcgctttcgggga
gtgattaaaattctcgataggcaatacaatgatgcctcagaattgcaaaagcaaaagctc
gaacaatacctcacagatcgaccgtgcgaagcatgtggaggcaaaagattaaaagccgaa
gctcaatcggtaaaattaggtcaatatggtatcctcgattttactagtgccgcgatcgat
gaatgtttggacagactcgatcggctagtattgaccgaaaaacaactcaaaatcggcgaa
ttagtcctcaaagaaattaccgccagactgcaatttttgcttaacgttggcttagattat
ctcacactcgatcgcgccgcgatgaccctctctggtggcgaagcgcagcgaattcgcctc
gcaactcaaatcggctccggtttgacaggcgtcttatacgttctcgacgaaccgagtatc
ggtttgcaccaacgcgataacggacgactcttaaacaccctgactaaattgcgcgactta
ggtaataccctcatcgtcgtcgaacacgacgaagataccattcgcgccgccgatcatttg
gtcgatatcggtcctggtgcgggcgtacatggtggtagtatcgtcgttgagggagatttg
aaggcactgctcgaatccgaagactcgatcacaggagcctatttatctggacgcataggc
atcgagactccagcacaacgacgggaaggcaacggacgcagtttaattctcaaaaatgcc
aaccggaacaacctcaaacatctcgatgtcgattttccgctcggtaaactcgtctcaatt
acaggcgtatccggctcgggcaaatctaccctcgtcaacgaactcctccaccccgcacta
cagcaccatctcaccaaacgggtaccctttcccaaagatgtcgatgagttgcaaggtatt
agcgcgatcgataaggttattatcatcgatcaatccccgatcggacgcactccgcgatcg
aatcccgtcacctatacaggcgtattcgacaccatccgcgaagtcttcacccaaaccatc
gaagccaaaacgcgcggttataaagcgggacagttttccttcaacgtcaaaggcggacgc
tgtgaagcctgtagcggacaaggggtaaacatcatcgaaatgaatttcctccccgatgtc
tacgtgcaatgcgacgtctgcaaaggcgaacgctacaaccgcgaaaccctccaagttaaa
tataaaggtaaatcgatcgccgatgtcctgaatatgaccgtcgaagaaggcttaggcttc
tttgagaatatcccccgcgccgctacccgcctccaaaccctcgtcgatgtcggcttaggc
tacgtcaaactcggacaaaccgcccccaccctctctggcggcgaagcccaacgcgtcaaa
ctcgccaccgaactttccaaacgcgccacgggtaaaaccttatatttaatcgacgaaccc
accaccggactctcattctacgacgtccacaagctcctagacgtgctgcaaagactagta
gacaagggtaattccattattgtcatcgaacacaacctcgacgtgattcgctgctccgac
tggacgatcgatctggggccagaaggtggtaataaaggaggagaattagtcgcagtggga
acaccggaacaggtggcgaaaaatcctaagtcgcatactgggaaatatctcaagcaagtg
ttaaaacaacattcagcaacggtgaaagcttag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (25)   
   Pfam (25)   
All databases (48)   

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