KEGG   Corynebacterium marinum: B840_01245
Entry
B840_01245        CDS       T03633                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
cmq  Corynebacterium marinum
Brite
KEGG Orthology (KO) [BR:cmq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cmq03032]
    B840_01245 (topA)
   03400 DNA repair and recombination proteins [BR:cmq03400]
    B840_01245 (topA)
Enzymes [BR:cmq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     B840_01245 (topA)
DNA replication proteins [BR:cmq03032]
 Prokaryotic type
  DNA Topoisomerases
   B840_01245 (topA)
DNA repair and recombination proteins [BR:cmq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      B840_01245 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4
Other DBs
NCBI-ProteinID: AJK67882
UniProt: A0A0B6TD96
Position
245876..248851
AA seq 991 aa
MAEAKGSGKKTLVIVESSTKAKKIQPYLGSDYIVEASVGHIRDLPRGAADVPVKYKKEPW
ARLGVDTENGFAPLYVVSPDKKKKVADLKAKLKLCDELLLATDPDREGEAIAWHLLEVLK
PTVPVRRMVFNEITKPAILAAAENTRELDENLVDAQETRRILDRLYGYEVSPVLWKKVMP
RLSAGRVQSVATRVIVERERERMAFISAEYWDLSADLDTGNEAEDPENPRNFQAKLATID
GRRVAQGRDFDDRGQLKGEAVVVGKQQAEALAESLRGVDMQVSGVEEKPYTRKPYAPFMT
STLQQESGRKLHYTSDRTMRIAQRLYENGHITYMRTDSTSLSAQGMEAARQQAKELYGDA
FVAATPRRYDRKAKNSQEAHEAIRPAGERFATPGELHGQLDAEEFKLYELIWQRTVASQM
SDAKGTSMKVTIAGTARTGERTEFSATGRTLTFPGFLRAYVETTRLSDGRDVADNAEKRL
PNLAEGDRLTATSINADGHSTNPPARYTEASLVKKMEELGIGRPSTYASIIKTIQDRGYV
VPRGNALVPSWVAFAVVGLLENNFGPLVDYDFTSSMEDELDNIAAGEEDRTEWLTGFYFG
DAEADDSTAESVARHGGLKALVGENLEHIDARSVNSLHLFDDEEGRPVYVRVGRYGPYIE
RKVGENADGEPEYQRANLPETTTPDELSLEFAEKLFATPQGGRELGVNPANGRTIVVKEG
RYGPYVTEVVRDDERATAEASAEKVVVKERAEEDAQRAAEGKRAKNWETKTAAAQKEKRI
AALVEENLKPGTASLFKTMEPASVTLEDALRLLSLPREVGVDPADNEVITAQNGRYGPYL
KKGTDSRSLTDEDQIFSVTLDEARRIYAEPKRRGRAAAQPPLKTLGDNDVSGKPMTVKDG
RFGPYVTDGTTNASLRKGDNPETITDARANELLSERRAKEAADGGAPAKKAPAKKAPAKK
TTAKKTTAKKTTRKAPSPGTKRVVKAGTRKK
NT seq 2976 nt   +upstreamnt  +downstreamnt
gtggcagaagctaagggatcagggaagaagaccctggtcattgtggagtcgtcgaccaag
gcgaagaagatccagccttatctgggcagcgactatattgtcgaggcctcggtcggccac
atccgtgatcttccccgcggtgccgccgacgtgccggtgaaatacaagaaggaaccctgg
gcccgcctcggcgtggacacggagaacggtttcgccccgctgtacgtggtcagcccggac
aagaagaagaaggtcgccgacctcaaggcgaagctgaagctctgcgacgagctgctgctg
gccactgaccccgaccgcgagggcgaggccatcgcgtggcacctgctcgaggtcctcaaa
ccgacggtgccggtgcgccggatggtgttcaacgagatcaccaagccggcgatcctcgcc
gccgcggagaacacccgcgagctggacgagaacctcgtcgatgcccaggagacccgccgc
atcctcgaccgcctctacggctacgaagtgtccccggtcctgtggaagaaggtcatgccg
cggttgtcggccggccgcgtccagtcggttgccacccgcgtcatcgtcgagcgggagcgc
gagcgcatggcgttcatctccgccgagtactgggatctgagcgccgacctggacaccggc
aacgaggccgaggacccggagaacccgcggaacttccaggcgaagctggcgacgatcgac
ggtcgacgggtcgcccaggggcgcgacttcgatgaccgcggacagctcaagggggaggcg
gtggtcgtcggcaagcaacaggccgaggcgctcgccgagtctctccggggcgtggacatg
caggtctccggagtggaggagaagccctacacgcgcaagccctacgcgccgttcatgacg
tcgaccctccagcaggagtccggccggaagctgcactacacctcggaccgcacgatgcgc
atcgcgcagcggctctacgagaacggccacatcacctacatgcgtaccgactcgacctcg
ctgtccgcgcagggcatggaggcggcgcgtcagcaggcgaaggaactctacggggacgcc
ttcgtcgccgccacgccccgcaggtacgaccgcaaggcgaagaactcgcaggaggcgcac
gaggcgatccgccccgccggcgagcgcttcgccacccccggcgagctgcacggacagctc
gacgcggaagaattcaagctctacgagctgatctggcagcgcaccgtcgcctcgcagatg
tcggacgcgaagggcacctccatgaaggtgaccatcgccggcaccgcccgcaccggcgag
cggaccgagttctccgccaccggccgtaccctcaccttcccgggtttcctgcgcgcctac
gtggagaccacccggctctccgacggccgcgacgtcgccgacaacgcggagaagcgcctg
ccgaacctcgccgagggcgaccggctcaccgccacctcgatcaacgccgacggacactcc
accaacccgccggcccgctacaccgaggccagcctggtcaagaagatggaggagctcggc
atcgggcgcccgtcgacgtacgcgtccatcatcaagaccatccaggaccgcggttacgtc
gtcccccgcggcaacgcgctcgtgcccagctgggttgcgttcgccgtcgtcggcctgctg
gagaacaacttcggcccgctggtggactacgacttcacatcctccatggaggacgagctc
gacaacatcgccgcaggcgaggaggaccgcaccgagtggctcaccggcttctacttcggc
gacgccgaggccgatgacagcaccgccgagtccgtcgcccgccacggtggcctgaaggcg
ctggtgggtgagaacctcgagcacatcgacgcccgctcggtgaactcgctgcacctcttc
gacgacgaggaaggccgacccgtctacgtccgcgtcggccggtacggcccctacatcgag
cgcaaggtcggcgagaacgccgacggcgagccggagtaccagcgcgccaacctgcccgag
accaccaccccggacgagctcagcctggagttcgccgagaaactcttcgccactccgcag
ggcggccgcgagctgggggtcaacccggccaacggccgcaccatcgtggtgaaggagggc
cgctacggcccctacgtcacggaggtcgtgcgcgacgacgagcgcgccaccgccgaggcc
tccgctgaaaaggtcgtggtgaaggaacgcgcggaggaggatgcccagcgcgccgccgag
ggcaaacgggccaagaactgggagaccaagaccgcggccgcccagaaggagaagcggatc
gccgccctggtggaggagaacctcaagccgggtaccgcatcgctcttcaagacgatggag
ccggcgtcggtgaccctcgaggacgccctccgtctgctcagcctcccccgcgaggtcggc
gtcgaccccgcagacaacgaggtcatcaccgcccagaacggccgctacggcccgtacctg
aagaagggcaccgactcccgctccctgacggacgaggaccagatcttcagcgtcacgctg
gacgaggcccgccgcatctacgccgagcccaagcgccggggacgagccgccgcgcagcct
cccctgaaaacgctcggcgacaacgacgtctccggcaagccgatgaccgtgaaggacggc
cgtttcggcccctacgtcaccgacggcaccaccaacgcctcgctgcgcaagggcgacaac
ccggagaccatcaccgacgcgcgcgccaacgagctgctctccgagcgccgcgccaaggag
gccgcggacggcggtgcccccgcgaagaaggcccccgcgaagaaggccccggccaaaaag
acgaccgcgaagaagacgacggcgaagaaaacgacacgcaaggcgccctccccgggcacc
aagcgcgtggtcaaggcgggcacgcggaagaagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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