KEGG   Clavibacter sepedonicus: CMS1999
Entry
CMS1999           CDS       T00678                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
cms  Clavibacter sepedonicus
Pathway
cms03030  DNA replication
cms03410  Base excision repair
cms03420  Nucleotide excision repair
cms03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CMS1999 (polA)
   03410 Base excision repair
    CMS1999 (polA)
   03420 Nucleotide excision repair
    CMS1999 (polA)
   03440 Homologous recombination
    CMS1999 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cms03032]
    CMS1999 (polA)
   03400 DNA repair and recombination proteins [BR:cms03400]
    CMS1999 (polA)
Enzymes [BR:cms01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CMS1999 (polA)
DNA replication proteins [BR:cms03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CMS1999 (polA)
DNA repair and recombination proteins [BR:cms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CMS1999 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CMS1999 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: CAQ02096
UniProt: B0RET1
Position
complement(2116621..2119305)
AA seq 894 aa
MPNTEKPTLLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEKPTHV
GVAFDISRFSFRTREYPGYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDIL
ATLATQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQP
GMYPDIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEITGKVGDNLRAQY
ENVIRNRRLNRLLTDVELPLGPADLERKPIDEPALREVFAVLEFKQLLDRVLKLEGSGAS
ASSEGTPVGAVEQEPSTAPAAPRPQQLLDEELAKWIETQSAASPHGLGLTVETQDGKPVG
FGLASATEAVTLPWQEGRADYAPFERWLASDAPKVMSDAKVQVKAMRRAGLRVQGLAFDV
LVAGWLLRPGFTDKSLAALVSRYLMEDLPEPDANQLVPETEALTAPVEAWYTLRVEHALR
EVLDERTLGVMVDIEMPTLLVLVEMELRGVATDRAGLAELSAQLQERITGLAERAFAEIG
KEINLGSPKQLQEVLFDQLGMPKTRANKTGFSTDAGALADLQASNPHPFLDLLLEHRDAS
KLRQIIQTLERGIGDDERIHTTYVQTGTTTGRISSNDPNLQNIPVRTEEGRRIRSAIRVG
EGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVEPADVSPAMRT
KVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQLMTDYFARFGAVRDYLRQVVEEARAAGYT
ETIFGRRRPFPDLNSPNRVLRDNAERAALNAPIQGSAADIMKIAMIRIEADMRERDMASR
MLLQVHDELILEVAPGEWDALQAIVTDRMAHAADLRVPLEVQVGRGDSWAAAAH
NT seq 2685 nt   +upstreamnt  +downstreamnt
gtgccgaacacggaaaagcctaccctcctcgtcatcgacggccattccctggcgttccgg
gccttctacgccctgccggcggagagcttccagaaccgcgaggggcagcacaccaacgcc
gtgcacggcttcatcgccatgctcatcaacctcctgcagaaggagaagcccacgcacgtc
ggcgtcgcgttcgacatctcgcgcttttcgttccgcacgcgcgagtacccggggtacaag
ggcacgcgcggcgagacgcccgtggagttcacgggccaggtgccgctgctcgagcgcgcg
ctgaagaccatgaacatccccaccctcaccaaggaggaccacgaggccgacgacatcctc
gcgaccctcgccacgcagggtcgggagcagggcttccgggtgctcgtggtctcgggcgac
cgggacgcgatccagctggtcaacgacgacgtgacgctgctgtacccgtccacgcagggc
gtctcgcagctcacgcgctacgacgcggagaaggtgttcgagaagtacggcgtgcagccg
gggatgtacccggacatcgcggcgctcgtgggggagacgagcgacaacctcatcggcgtc
gacaaggtcggcccgaagaccgcggtcaagtggctcaaccagtacggatccctcgacgcg
gtgctcgagcaccgcgacgagatcacgggcaaggtcggcgacaacctccgcgcccagtac
gagaacgtcatccgcaaccgccgcctcaaccggctgctcaccgacgtcgagctgccgctc
ggcccggccgacctcgagcgcaagcccatcgacgagcccgccctccgcgaggtgttcgcg
gtgctggagttcaagcagctgctggatcgcgtgctgaagctcgagggatccggcgcgtcc
gcgtcgagcgagggcacgcccgtcggcgccgtcgagcaggagccgtcgaccgcgccggcc
gccccgaggccgcagcagctcctcgacgaggagctcgcgaagtggatcgagacgcagagc
gccgcgtcgccgcacggcctggggctcacggtcgagacgcaggacgggaagcccgtcggc
ttcgggctcgccagcgcgaccgaggccgtgaccctgccctggcaggagggccgcgcggac
tacgcgcccttcgagcggtggctcgcgagcgacgcgcccaaggtcatgtccgacgccaag
gtccaggtgaaggcgatgcgccgggccggcctccgggtccagggcctcgccttcgacgtg
ctcgtcgcgggctggctgctgcgtccgggcttcaccgacaagtccctggcggccctcgtg
agccggtacctcatggaggacctgcccgagccggacgccaaccagctcgtgcccgagacc
gaggcgctcacggcgcccgtcgaggcctggtacacgctccgggtcgagcacgcgctgcgc
gaggtgctcgacgagcgcacgctcggcgtcatggtcgacatcgagatgccgaccctgctc
gtgctcgtggagatggagctgcgcggggtcgcgacggatcgcgccggactcgccgagctg
tcggcgcagctgcaggagcgcatcaccggcctcgccgagcgcgcgttcgccgagatcggc
aaggagatcaacctcgggtcgccgaagcagctgcaggaggtcctcttcgaccagctcggc
atgccgaagacgcgcgccaacaagaccggcttctccaccgacgcgggcgcgctggccgac
ctgcaggcgtccaacccgcaccccttcctcgacctgctcctcgagcaccgcgacgcgagc
aagctgcggcagatcatccagacgctcgagcgcggcatcggcgacgacgagcggatccac
accacctacgtgcagaccggcaccaccaccggccgcatctcgtcgaacgacccgaacctg
cagaacatccccgtccgcacggaggagggccgccgcatccgcagcgccatccgcgtcggc
gagggctacgagacgctgctcacggccgactactcgcagatcgagatgcggatcatggcg
cacctctcgggcgacgccgggctcatcgaggccttcgaggtcggcgaggacctgcaccgc
ttcgtcggatcgagcatcttcggggtcgagcccgcggacgtgagcccggccatgcgcacg
aaggtcaaggccatgagctacgggctcgcctacgggctcagcgccttcgggctgtcgaag
cagctgcgcatcccgtcgtcggaggcgaagcagctcatgaccgactacttcgcgcgcttc
ggcgcggtgcgcgactacctccgccaggtggtggaggaggccagggccgccggctacacg
gagacgatcttcggacgccgtcgcccgttccccgacctcaacagcccgaaccgcgtcctc
cgcgacaacgccgagcgggctgccctcaacgcgcccatccagggctcggcggccgacatc
atgaagatcgcgatgatccgcatcgaggccgacatgcgcgagcgcgacatggcgtcgcgc
atgctgctgcaggtgcacgacgagctcatcctcgaggtcgccccgggggagtgggacgcg
ctccaggccatcgtcaccgaccgcatggcccacgcggccgacctccgcgtgccgctcgag
gtgcaggtgggccgcggcgactcgtgggccgccgcagcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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