KEGG   Chlamydia muridarum Nigg CM972: Y015_04765
Entry
Y015_04765        CDS       T03671                                 
Name
(GenBank) RNA polymerase sigma54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
cmur  Chlamydia muridarum Nigg CM972
Pathway
cmur02020  Two-component system
cmur02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:cmur00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Y015_04765
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Y015_04765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cmur03021]
    Y015_04765
Transcription machinery [BR:cmur03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Y015_04765
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_36 DUF4363 HTH_11
Other DBs
NCBI-ProteinID: AHH24213
Position
1042098..1043378
AA seq 426 aa
MLHQHQTASVALCPALHIQQSLDMLQMPVAELSEFLSQQITINPCFDLDALDDLPDTCSF
FPISEHHPFTETLLSHLLHQIEVHFSLPQDRAIAQYIVGNLSPEGLFLEDPSLSASNLGV
SDVLFQKIWLRIQQFHPLGIASSSLQSYWLSLLDPSSHKEALMIIRQHFNRLARCDFAGI
SKKIQLPIAKILVFLRQALASIPWCPAAGFPNSLKTPSPALPDAYLSFSHEKSWEIFMNK
DSLPAIRLNSTVLHIYHTLPRDDKDHLSQQIRAAKQLLRNIKKREETLLAVLRVLIPYQE
EFLLKKRSVPKAFSVKQLARELSLHETTICRAINNKTLATPIGLISMRSLFPQAVGACPD
QSKATILHWIHQWISTEKNPLSDEAISQKIIAKGIPCARRTVAKYRSQLNIPPAHQRKHV
NASLVP
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgttgcatcagcatcaaacagcatctgtagctctttgtcctgctttacatattcaacaa
agtttggacatgctacagatgccggttgctgaactctcggaattcttatctcaacaaatc
actatcaatccttgtttcgatctcgatgccctggacgatcttccagacacatgttccttt
ttccctattagtgagcaccatcctttcacagagaccctattatcccatctacttcaccaa
atagaggtacatttttctctccctcaagaccgtgctatagcccaatacatcgtagggaat
ctttctcctgaaggactctttttggaagatccctctctctcggcttcaaatttaggagtt
tctgatgtcctttttcaaaaaatatggctacgcatccaacaatttcatcccctaggaatt
gcctcatcttctcttcaatcctattggctatctttactagatccttcttcgcataaagaa
gctttaatgattatccgacagcactttaatcgattagctcgttgtgattttgccggcatt
tctaagaaaattcagctgcccatagcaaagattcttgtatttcttagacaagctctagct
tccatcccctggtgtccagcagctggatttcctaattcacttaaaactccttctccagcg
cttcctgatgcctatctttctttctcacacgaaaaatcttgggaaatctttatgaacaaa
gattctcttccagctattagacttaatagtacggtgcttcatatttaccacaccctcccc
cgtgatgataaagaccacttatcacaacaaattcgtgctgcaaaacagctgcttcgcaat
ataaaaaaacgtgaagaaactttattagcagtccttcgcgttttaattccttatcaggag
gaattccttcttaaaaaacgttctgttccgaaagctttttcagtaaaacaactagctcgc
gaactctctcttcatgaaaccactatttgtcgggcaatcaataataagacgctcgcaaca
cctatcggattgatttctatgcggtcgctatttccacaagctgttggagcttgtcctgat
caatctaaagctactattttacattggatacatcagtggatatctacagaaaaaaatcct
ctatctgacgaggctattagccaaaaaattattgcgaaaggaattccttgtgcacgccgt
acagtagcaaaatatcggtctcaactaaacatccccccagcgcatcagcgtaaacatgtg
aatgcttctctagtgccataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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