KEGG   Chelonia mydas (green sea turtle): 102929490
Entry
102929490         CDS       T02989                                 
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
cmy  Chelonia mydas (green sea turtle)
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cmy03016]
    102929490 (RTCB)
Enzymes [BR:cmy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     102929490 (RTCB)
Transfer RNA biogenesis [BR:cmy03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    102929490 (RTCB)
 Prokaryotic type
   tRNA splicing ligases
    102929490 (RTCB)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 102929490
NCBI-ProteinID: XP_037736298
Position
1:complement(251677319..251693463)
AA seq 505 aa
MSRSYNDELQYLDKLNKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagccgcagctacaacgatgagctgcagtatctggacaagctcaacaagaacagctgg
aggatcaagaagggcttcgtgcctaacatgaatgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggcggtgctggt
ggattcttgcctgccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctattgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagaggcagtggtgtcaccaggtggtgtcgggtttgacatc
aactgtggtgtccgattgctgcgtacgaacctggatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaggccatgtttgaccatattccagttggggtgggctccaagggtgtc
atccccatgaacgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcggaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataatgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccggagggacaggactacctaaagggaatggcagcggctgggaactatgcatgggtcaac
cgctcttccatgactttcctaaccagacaggcctttgctaaagtcttcaacacaacccct
gatgacctagatcttcatgtgatctatgatgtgtctcataacatcgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgaccagggct
ttccctcctcatcatcctctcattgctgtcgattaccaactgactggacagccagtactg
attggcggaacaatgggaacctgcagctatgttcttactggtaccgaacaaggcatgacc
gagacctttggaaccacgtgccatggagctggtcgtgcattgtcccgggccaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgccatccgt
gttgcttcccccaagctagtcatggaagaagcaccagaatcctataagaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (26)   

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