KEGG   Chelonia mydas (green sea turtle): 102934939
Entry
102934939         CDS       T02989                                 
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X3
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
cmy  Chelonia mydas (green sea turtle)
Pathway
cmy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cmy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102934939 (PNLDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cmy03019]
    102934939 (PNLDC1)
Enzymes [BR:cmy01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     102934939 (PNLDC1)
Messenger RNA biogenesis [BR:cmy03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102934939 (PNLDC1)
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 102934939
NCBI-ProteinID: XP_037751021
Position
3:117244005..117267196
AA seq 528 aa
MELGTGQFAQSLPHLRALVLGCDFLGFDMEFTGLHSVFPQGKQPSLFDSPAEWYLKARRS
VQKFTVNQLGLSIFSNEKSNKYVARCYNFFLFPTTFGVMDSEFSFQASSIQFLTHYGFDY
NKFLKDGIPYMNQVQEKKLQQGLLAGNWKVRSTLDKDKVKKVIDDVTCWVPSAEEGDSMV
LHNISGFQLFEIQLILRQAIPDVWTEPFGDQKVMVKKVSPRHRWCLENSSYDCCRKELIL
LSARGFTNLFQTLVEAKKPVVGHNMLMDLLHLHDKFYKPLPESYEEFKRNIHSLFPVLID
TKNVTKSIWKEFQFPRASNLLEIYEILCSDLNPTNPTCPVIAHASDCSKYADKKSPHEAA
YDAFLCGSVLLKLAHLLLGSDTLENGPSFSQYLSALTKYLNQVNLIRAGVSKINFSGTDV
PSQRPPLLIASVRGWPGVDEEQIYQILKALCKFDVRRLTENQFLLLSNKFKDVRVVLRDY
KAHPNLRISLYHHWRHSPQVNCLLQICGIVASWSLLAFVFGGSQWYAM
NT seq 1587 nt   +upstreamnt  +downstreamnt
atggagctggggaccgggcagttcgcgcagagcctgccccacctgcgggcgctggtcttg
ggctgcgacttcctggggttcgatatggaattcacaggtttacattcagtctttccacaa
ggcaagcagcccagtctcttcgattcacctgctgagtggtatctgaaggccagacggagt
gttcagaagttcacggtcaatcagctcgggttgtctatattttcaaatgaaaaatcaaac
aagtatgttgcacgctgctataacttcttcctcttccccacaacatttggagtcatggac
tctgaattctctttccaggcatctagcattcagttcctgacgcattacggttttgactat
aataagtttctgaaagatggaatcccatatatgaatcaggttcaggagaagaaacttcag
caagggctcttagctggaaactggaaagttcgcagcactttggacaaggataaagtgaaa
aaggtgattgatgatgtgacatgctgggtgccatcagcagaagagggagactctatggtt
ctacataatattagtggttttcagctatttgagatacagctgattctgagacaggcaatt
ccagatgtttggacagagccttttggagatcagaaggtgatggtgaaaaaggtgagtcca
cggcatcgctggtgtctggagaactcttcttacgactgctgccgaaaggagctcattctt
ctctctgcccggggtttcaccaacctcttccagacccttgttgaagccaagaagccagtg
gtgggacacaacatgctcatggaccttctgcatcttcatgacaagttttacaagcccctc
ccagaaagctatgaggagtttaaaaggaacattcacagcctgtttcctgtcctcatagac
accaagaatgtaacaaaatccatctggaaggaatttcagtttccacgagcatctaacctc
ctagaaatttatgaaatcctgtgcagtgacctaaatcccaccaaccccacatgtccggtg
attgcccatgcaagtgactgttcaaaatatgctgacaagaaatctccccatgaggcggcc
tatgatgcatttctttgtggatcagttcttttgaaattagcccacttgctcctaggcagt
gacacgctggagaatggtccctctttctctcaatatctcagtgcattaaccaagtacctg
aaccaagtgaatctgatccgagctggcgtttcaaaaatcaatttctctggcacagatgtc
cctagccagcgtccacctcttctgattgccagtgttcgggggtggcctggggtggatgaa
gaacagatctatcaaatattaaaagctctgtgcaagtttgatgtcagacgactgaccgaa
aaccaatttctgttgctctccaataagtttaaggatgtcagggttgttctgcgagattat
aaagctcaccccaatctgcggatttcactctatcaccactggagacactcaccacaagtg
aactgcttgctacaaatttgtgggattgtggcatcatggtctcttttggccttcgtgttt
ggaggatctcaatggtatgccatgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (1)   
   Pfam (1)   
All databases (33)   

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