KEGG   Cryptococcus neoformans var. neoformans B-3501A: CNBA6240
Entry
CNBA6240          CDS       T01040                                 
Name
(RefSeq) hypothetical protein
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
cnb  Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cnb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNBA6240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cnb03019]
    CNBA6240
Messenger RNA biogenesis [BR:cnb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CNBA6240
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     CNBA6240
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 4933888
NCBI-ProteinID: XP_777746
Position
1:1738719..1741543
AA seq 838 aa
MSGGFFGFDTALPEHRQAADRPNDAADTSKFQNASSLLNPFNLEAPEDEEMEVYTWGQGL
DKDVEAADELNDATFGVDVNAIRGGQFSFGNEESFSSPAKPSKQSQSQRGPIASTASRYR
PKVAADPFAFSEDDFYASRPVKKTQPKPKTKSSAEPVWTKPAGQVTSWGAAPSSTVKPSL
GSNHAQVEAPGHIKSLEEIEAEFASMPAPSAAQAAFQAPAQLSGPPPANAVVTLEELERQ
MMEEVPQPLAQHQAQQQGPPREVTPTQIPGLAQSGYASQKAVLDSMFPDLGKSPGPVPPG
QQQGQTRQSPAPIVPSHEELARQEHFQKVFEAKVQAMSKYNNLMGSSDKDFITRIQLSQL
ATSDPYISDFYAQVFSAMERSRRAHESGQMDRPTVVQIAAGFGFGVGGPAGNRFGKMGQN
TMQKLSTQVKKLVESRTAHQKSTNTAALQGALGRVTRGGAAAPRPVLAIPTNTKLENRPA
SHLNQSTGIQRPPLTRKQIMYALEDLYTDVLELEQFRREAPPSTSVDDIEIWNAKCQVKV
DQIWAKLMVQEPIEVSNPHPFISLLNPPKGQRILGRIILQLPDQKIYTLLSLLVVKFHQL
DVVARAPPPPVTDASLLTKADRLDRAKREADTDGFLYNLVPAMDMAINKCKLGLLGGLLV
AAVQRLDVVKIASTRPGVVLFTALLSKAQSLIRAPPPDPLNPHSGTHPDQIELEHFPRQF
SVFLDALLPSLPDLFPSSIAAKHAFGPSAYLMSGENLPEKEGLEMERREAEVWGLAAALA
VNSAEEEQTALVAALREKILHTVQGARNPMVGPVRAEMKLRNVNMFLNGLGLDAAMIE
NT seq 2517 nt   +upstreamnt  +downstreamnt
atgtcaggcggattcttcggcttcgacaccgcacttcccgaacaccgccaagccgcagac
cgtcccaatgacgcagccgacacttccaaattccaaaatgccagttctctgcttaatccc
ttcaatctagaagccccagaggacgaggaaatggaagtctacacttggggtcaagggcta
gacaaggatgtagaggcagcagatgagctgaatgatgcaacgtttggcgtggacgtcaat
gctatcaggggtggacagttctccttcggcaatgaagagtcattttcttccccggctaag
ccgtcaaagcaatcccagtcgcaaagaggacccatcgcgtcgactgcctcccgatatcgg
cctaaagtcgcggccgatccgtttgccttttctgaagatgacttttatgcttctcgccct
gtcaagaagacccaaccgaagcccaagacaaagtcttcggctgagcctgtttggacaaag
ccagctggccaggtcactagttggggagcggccccatcctcaacagtaaagccatccctt
gggtccaaccatgcacaggtggaagctcccggacatatcaagagcctcgaggagattgaa
gcggagtttgcgtcaatgcctgcgcccagtgcggcgcaggctgccttccaggcgcctgct
caattatcaggaccgccccctgcaaatgctgttgtgacacttgaagagcttgagaggcaa
atgatggaagaagttcctcaacctcttgcccaacatcaagcccagcaacaagggcctcct
cgagaggttactcccactcagattccgggtctcgcccagtcggggtatgcttctcaaaaa
gctgtcctcgacagtatgtttcctgaccttggcaaaagtcctggacccgtacctccaggg
cagcagcaaggccaaacaaggcaaagtcctgcccctatagttcctagtcacgaagagctc
gctcggcaggaacatttccaaaaggttttcgaagcgaaagtccaagcaatgtccaaatat
aataaccttatgggatcatctgacaaggactttatcacccgcatccaactgtctcagctc
gctacgtccgatccttatatttccgacttttacgcccaagtgttttctgcgatggagaga
agccgtcgggcccatgagagtggtcaaatggacaggccaactgtggtacaaattgcagca
ggttttggcttcggtgttggtggtccggccggcaacagatttggaaagatgggacaaaat
actatgcagaaattgtcgacgcaggtaaagaaactggttgaaagtagaacggcgcaccag
aaatctaccaatactgctgctcttcagggcgctctcggcagagtcacacgaggtggtgct
gctgctcctcgtcccgttcttgccatccctacaaacaccaagctcgaaaaccgtcccgcg
tctcatcttaatcaatctacgggcatacaacgtccccctctcactcgcaagcaaatcatg
tatgccctagaagatctctacaccgacgtccttgagcttgagcagttccgtagagaagca
ccaccttcaacctctgtggatgacattgaaatttggaacgctaaatgtcaagtaaaggta
gatcagatctgggcaaagcttatggttcaagaacctatcgaagtatcaaacccccatcca
ttcatatccctcctcaaccccccaaaaggtcaacgtatcctcggccggatcatccttcaa
cttcctgatcagaagatttacaccttgttgtcccttcttgttgtcaaattccatcaacta
gacgttgtagctcgtgctcccccgcctccagtcacagacgccagtctgttaaccaaggct
gataggttagaccgcgcgaagcgcgaggcggacacggacggcttcttgtataacttggtc
cctgctatggacatggcgattaacaaatgtaagctgggacttttaggtggtctgttggtt
gctgctgtgcagaggttggatgttgtgaaaattgcctctaccagacctggagttgtcctg
ttcacagcgctcttatcaaaagctcagtctcttatccgcgctccccctcctgatcctctc
aaccctcattccggtacccatcctgaccagatagagcttgagcacttccctcgtcagttc
tcggtgttccttgatgctcttttaccttctttgccagatcttttcccatcatctatcgct
gccaagcatgcctttggtccctctgcgtacttgatgtccggagagaatcttcccgaaaag
gagggcttagagatggagaggcgagaagccgaagtctggggcctggctgccgctttggcc
gtcaattcagcggaagaggagcagacagcgttggttgctgctttgagggagaaaattctt
catactgtccagggtgccagaaaccctatggttggccccgtcagagcggaaatgaaacta
agaaatgtgaacatgttcttgaacggtctcggtttggatgcggctatgattgaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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