KEGG   Cryptococcus neoformans var. neoformans B-3501A: CNBD1450
Entry
CNBD1450          CDS       T01040                                 
Name
(RefSeq) hypothetical protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
cnb  Cryptococcus neoformans var. neoformans B-3501A
Pathway
cnb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cnb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CNBD1450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cnb03019]
    CNBD1450
Enzymes [BR:cnb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     CNBD1450
Messenger RNA biogenesis [BR:cnb03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CNBD1450
  mRNA degradation factors
   3'-5' decay
    Pan complex
     CNBD1450
SSDB
Motif
Pfam: UCH_1 RNase_T PAN2_N UCH FYVE_CARP1-2 WD40 DNA_pol_A_exo1
Other DBs
NCBI-GeneID: 4935534
NCBI-ProteinID: XP_776097
UniProt: P0CQ09
Position
4:437611..441708
AA seq 1183 aa
MNYNPLHLLPLPPTALDPKPIPTSLTLDPFSDVLWVGASSGIVSALCSPLTLARNVHFPA
HGCKIGGGGFSAQGVSAVREVRVTDRDVWTLTEGGIGGRKRGGAPKWIVSDVTRSLRTMS
PNPTNSHELITGGSGSLLLANTARGEVVRSIENSSPVVKLAPLHRTVLAAGLSGQVTVLD
PRTGFKAAQNISPVQAHTGGLSGADVQGNIVATWGWTHMQGHPLPDPLIRLYDVRALRPL
PPISFSSGPAFVLLHPSSSSHIVVSSQQGMLQTIDMSLGPSATVFQQLDVSSYITSMALS
SRGDYLAFGDGDGQLHVWTTNETGENAAVDENGSIVLPPFNGYDGVKPEWPDQVDPLPTI
AWEESTPLNLVGMPYYNEALLSQFPSECYATSTSPLFNPPATIPQPVLSSMKMVDFVGYA
PNPKELRGKRYVLRAVPGAEGRARGKGRRDSGPRFRSEKDKKGTYKDKEEIEEELNDGEV
PKYYRKVEIKYSKFGIEDFDFEFYNRTNYSGLETDILNSYTNSLLQALHYTLPLRAIATA
HICVDCKKEHCLLCEAGFLFRMLEDAKGRNCQASNFSRAFSATSQAYALGLMDENTNSKS
TAPYGSLIQNFNRWLLSTFSTESIVDGETFHLRPFPQKTSGLDGLSMNDGPSAIDQVLGV
KIKTTNTCRHCGFVSSRDSTLHVVDLVYPKKMNPRLSFSDILRSSLIRDSTTKAICSSCK
AFAPLDSRRSLSPSSGHPLPPVLSVNAMVTNSDVYGFWKDKKDVKEKDGVRRFLPKRVTI
REVGKLENGQEEGVKYSIRSMVVQIQESPDAVAHLVSFVKMPSKDGSSAWIMFNDFLVRP
VSEDEVLSFPDQWKVPAVIILERENAEELLNLEVLPKELDREILFKDVSIAWNRKQDMIK
HKILQREEMPKRGTLVAIDAEFVALQQEEMEFRSDGTKNILRPSHMSLARVSVLRGEGEM
EGKPFIDDYIHTSEAVVDYLTEFSGIKAGDLDPNNSPHTLVPLKVAYKKLRLLVDLGCIF
VGHGLSKDFRTINIFVPPEQVMDTVLIYTLPGSQRKLSLRFLAWYLLHQDIQTNSHDSIE
DAHFALLLCKLWMDYASESEEAFEIVMEDIFAEGKKLAFKPPSSAGNMMAEQQLSPVSFP
PLSNGDQTVARAVVKSRMATPPPPTKLGLPQWASQNSPSPLRR
NT seq 3552 nt   +upstreamnt  +downstreamnt
atgaactataaccctctccatctcctgcccctcccaccgacagccctcgaccccaaaccc
atcccgacatccctcactctcgatcccttttccgatgtcctctgggtcggcgcatcctcc
ggaatcgtctcggcactatgttctcctctaactcttgctaggaatgtacacttccccgcc
catggatgcaagatcggaggcggagggtttagcgcgcaaggcgtgagtgctgtgagggag
gtcagggttacagacagagatgtttggactttaacagaaggtggtatcggaggacggaag
agaggaggagcgcccaaatggattgtcagtgatgtgacgcgctccctccgaacgatgtct
cccaatcccaccaactctcacgaactcatcactggcggttctggctcacttcttctcgcc
aacactgcccgaggtgaagtggtgaggagcatagagaactccagccctgtggtcaaactt
gccccattacatcgaaccgtcctagccgcgggcttgtctggtcaagtcaccgtgctcgac
cctagaacaggctttaaagctgcgcagaatataagtccagtacaggcccacaccggcgga
ttgagtggggcggatgttcaaggcaatatcgtcgctacttggggttggacacacatgcaa
gggcatcctctacccgatcctctgattcgtctgtatgacgtccgagctctacgacctctt
cctcctatctccttttcatccggcccggctttcgtcttgctacatccttcttcctcctcg
catatagttgtctcttcacagcaaggcatgcttcaaacaattgacatgtcgctcggtcca
tccgctaccgtctttcagcaacttgatgtcagctcgtacattacctccatggctcttagt
tctcgaggggactaccttgcatttggcgatggggatgggcaattgcacgtctggaccacg
aatgagacgggggagaacgcagcggttgatgagaatgggtcaattgtcctacctcctttc
aatgggtacgatggggttaaaccggaatggcccgatcaagttgatcctttaccgacaatt
gcatgggaagaaagcacccccttgaatcttgtgggaatgccatactataatgaagcacta
ctttcacaatttccatcggagtgctatgctacgtccacttctcccttatttaatcctccg
gccaccatccctcagcctgtcctctcgtctatgaagatggtagactttgtggggtacgcg
ccgaatccaaaagagctgagaggtaaacgatacgtcttacgtgctgttcctggtgctgaa
ggccgagctagaggaaaggggaggagagatagcgggcccaggttcagaagcgagaaggat
aaaaaggggacctacaaagacaaagaggagatagaggaggagcttaacgatggggaggtc
ccgaaatattatagaaaggtggagatcaaatattccaaatttggaatcgaggattttgac
tttgagttctataaccgcacaaattactctggactggaaacagatattctcaactcgtac
accaactctctcctccaagctcttcactacacacttcccctacgagccattgctactgct
cacatctgtgttgactgtaaaaaggaacattgtctcttgtgtgaggcgggcttcttattc
agaatgctagaagacgcgaaaggaaggaattgtcaggcaagcaacttttcaagagctttt
agcgccaccagccaggcctacgctctaggtttaatggacgagaacaccaacagcaaatcg
accgcaccatacggttctctcatacagaatttcaaccgatggctcctatctacgttcagt
actgaatccattgtcgacggtgaaaccttccaccttcgcccttttcctcagaagacttct
ggactggatgggttatcaatgaatgatggaccgtctgcaatcgaccaggtgctaggtgtc
aaaattaaaaccaccaatacttgcagacattgcggatttgtttcatctagagactcaact
ttgcatgttgttgacttggtatatccgaagaaaatgaatcctcgactttcgttctcggat
atcctacgctcctctctcattcgagattcgaccaccaaggccatctgctcctcatgcaaa
gcctttgcccctcttgattctcggcgtagcctctcgccttcctctgggcatccgcttcct
ccagtgctttcagttaacgcgatggtgactaactctgacgtatatggcttctggaaagac
aagaaagacgtaaaggaaaaagatggcgtgaggaggttcttaccgaagagggtaacaatt
agagaagtagggaagcttgagaatggccaggaggaaggggtcaagtattccattcggtcg
atggtggtacaaatacaagaatcaccagacgctgtagctcatcttgtgtctttcgtcaaa
atgccatcaaaagacggctcctcggcatggatcatgttcaatgatttcctcgtccgacca
gtctcggaggacgaagttctttctttccccgaccaatggaaggtgccagctgtgatcatc
ctcgaaagggagaatgcggaagagctgctgaatttagaagtgttgcccaaggagcttgac
agagagatattattcaaagatgtgtctatcgcttggaaccgcaagcaagacatgattaaa
cacaagatattacaacgggaggagatgccaaaaagagggaccctcgttgctatcgacgcc
gaatttgtggctctccagcaagaagaaatggagttccgatcggacggtaccaagaatatt
cttcgaccgtcacatatgtctttggcgcgggtgtcagtcttgcgaggagaaggggaaatg
gaagggaagccatttattgacgattatattcacacgagtgaggctgtggtggactatctt
accgaattcagtggtatcaaggcgggggatttggacccgaacaactcaccgcatactctt
gtgcctctcaaggttgcctacaagaagttaagattgctggtggaccttggatgcatcttt
gtcggccacggtttatcgaaagattttagaaccattaacatcttcgtcccacctgaacaa
gtcatggacactgtcctgatctacaccttgccaggaagtcagcgtaaactctctcttcga
ttccttgcatggtatctcctacatcaagacattcaaacaaactcccatgattctatcgaa
gacgcacacttcgccctgctactttgcaagttatggatggattacgcctcggaaagtgaa
gaagcgtttgagattgtgatggaggacatttttgctgaagggaaaaagttggccttcaaa
cccccaagcagtgctggaaacatgatggcggaacagcagttatcgccggttagttttcct
ccattatcgaatggtgatcagacggtggctcgtgcagtggttaagtcaagaatggctacc
cctccgcctcctacgaaattggggctgccgcaatgggcatctcagaacagccccagtcca
ttaagacggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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