KEGG   Cryptococcus neoformans var. neoformans JEC21: CNB00060
Entry
CNB00060          CDS       T00243                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K13171  serine/arginine repetitive matrix protein 1
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03013  Nucleocytoplasmic transport
cne03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CNB00060
   03015 mRNA surveillance pathway
    CNB00060
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNB00060
   03041 Spliceosome [BR:cne03041]
    CNB00060
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CNB00060
Spliceosome [BR:cne03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   SR-related proteins
    CNB00060
SSDB
Motif
Pfam: PWI
Other DBs
NCBI-GeneID: 3255858
NCBI-ProteinID: XP_568752
UniProt: Q5KMY4
Position
2:join(15772..15816,15876..16073,16127..16258,16331..17245)
AA seq 429 aa
MADTGMRGTNALQDSRFKDKELASIKSTKFPKHFSEKVDLRKVNISVLRPWVAEKVTELI
KVEDDIVVEYVFGMLEDRDNPTPDPKKMQVSLVGFMDKYGAAAFMDALWKLLLSAQKTVG
GVPAEFIEAKKQELQRKQQESSSLPLPPAPPAMASHSQARSSGPAGRSRAEDYYGREPRG
GGGVPRGRDARDGRDGLPTRPYPPARSPRHRSRSRSRSRSRSRSPPPRRPFTNTNSGRYP
DRQPDRDRDREWGNRRGYPRGGESFRDRARDEGWGSRGGGSSVNPRERNARRPTPPRRPT
PPRRPSPPRRPSPPPTAQIRIRGRGRGRSLSRSLSRSRIPSRSLSPPVRRDRGHGRKYGQ
DSDRGRSLSQSRSRSRSRSDTPPRTQTRKRPRSVRSRSRSRSRSHSRSRSRSRTPVRQRT
RDYTPTPEL
NT seq 1290 nt   +upstreamnt  +downstreamnt
atggcagatacaggtatgcggggcacaaacgccctccaagactctaggttcaaagacaag
gaactggcgagcatcaaatctacaaagttccctaaacatttctctgaaaaagtcgatctc
cgcaaagtcaacatctccgtgctccgtccttgggttgctgaaaaggttaccgagcttatc
aaggtggaggatgatatcgttgtggagtatgtctttgggatgctcgaagatcgtgataat
cctacgcccgacccgaagaagatgcaagtttccctcgtagggttcatggacaagtacggc
gccgcggcattcatggacgctctttggaaactacttctttcagcgcaaaagactgttggc
ggtgtccctgccgaatttatcgaagccaagaaacaggaactgcaacgaaaacaacaggaa
tcatcttccctccctcttcctcctgctccgcccgccatggcatcccattctcaagctcgc
tcatccggcccagcgggccgatcgagggcggaagattactatgggcgtgaaccgcgtggg
ggtggtggagtccctcgaggcagagatgcgcgagatgggcgagatggactccccacccgg
ccatacccccctgcccgctctcctcgccatcgttctcgatcccgatcccgatctcgatcc
cgatcccgttctcccccaccccgccgaccttttacaaacaccaactctggccgatacccc
gaccgacagcccgaccgcgaccgcgaccgagagtggggtaaccggcgtggttacccaagg
ggaggagaatcatttagagatcgagctagagacgagggatggggttcccgcggcggcggc
tcgtccgtcaatccgagagaaagaaatgcccgtcgtcctaccccaccacgccgtcctacc
ccaccacgccgtccttccccaccgcgccgtccttccccaccacctaccgcccaaattcga
atccgaggccgaggcaggggtcggtctctctcacgttccctttcccgttcgcgtattccc
tctcggtccctctcaccgcctgttcgtcgggaccgcggccacggacggaaatacggacaa
gactctgaccgtggtaggagcctgagccaaagcagaagccgaagcaggagcaggagcgac
acccctccgcgtacacagacacgaaaacgcccgcgatccgtgcgctcacgatcacgctct
cgatcacgctctcactctcgctctcgatctcgctcgcggacacctgtaagacaaaggacg
agggattacacgccaacaccggagctgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (94)   
   KEGG ORTHOLOGY (1)   
   RefGene (90)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (104)   

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