KEGG   Cryptococcus neoformans var. neoformans JEC21: CNC01430
Entry
CNC01430          CDS       T00243                                 
Name
(RefSeq) conserved hypothetical protein
  KO
K15542  polyadenylation factor subunit 2
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    CNC01430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNC01430
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     CNC01430
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 eIF2A NBCH_WD40 Ge1_WD40 Coatomer_WDAD MIOS_WD40
Other DBs
NCBI-GeneID: 3256507
NCBI-ProteinID: XP_569471
UniProt: P0CS46
Position
3:complement(join(392154..393405,393457..393577,393624..393969,394019..394123,394172..394240,394290..394535))
AA seq 712 aa
MTAPTVPADQHGHPLPGPADPAANDTWRPSRYREPLHPDNEEVLEQAAYQAAVTRSSGDD
RKRKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSI
CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS
FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQGHREACHDVSWSPNDERFVTCGDDGLV
KIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSSK
STINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLVS
GDALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRAR
PPGGQEFDKWHLTEEGAAQKELERITKREWGTNAPPANAAGGGGGGGGDKQQVALPGLSN
LVAAVNSVKTGPTTTGGGPSGLPGLGAPNVHAGTPPSRVSTPSSMGPPGPGAQGQAQGGQ
FPRGRSALPSQNDMLRHNHGSRGGFADRDRNGGGDRGGMDRDRDSRGGRQDPRGNQMYGR
GPGGPPPGPPPGQGGYNYPPAPPNYPPYPPSSYPPPPNNQPGYPPAPNYAMPPGPGAPPQ
SYPYNRPPQGPPQNNNPGGQGNYGASASGGYGQYGGGGGGGGGGGYGRDGRR
NT seq 2139 nt   +upstreamnt  +downstreamnt
atgacagcgcccaccgtccccgcagaccagcacggccacccgctcccaggccccgcagac
cccgcagccaacgacacatggcgcccctcccgctaccgcgaacccctccacccggacaac
gaagaggtcctcgagcaggctgcctaccaggccgcagtcactcgttccagcggcgacgac
aggaagaggaagataaagccgaggcggacggtcgactaccagggcggcgtccagaaatgg
agaatgctgaacaagctcaagggcgtccacgaattcaggccagccatacaccctaacccg
tctgatattgtcaactttcttccgcctgtagcactccggtcaaacccgtcgacgtctata
tgtgattactgggtccacacctcgataaataaagaacgttctcccacccgtgtcgtcaga
tggacaccagacgcccgtcgtctgctcacaggcaatgacaagggccaattcacgctctgg
aacggtgcctctttcaactacgagtccattactcaggtacacgacgactctatccggtcc
ttcacctactcgcacaacggccaggcgcttgtttcagccgacaaaggcggcacgatcaag
tactttacaccgcatctcacaaatatacatggtttccaggggcatcgagaagcttgtcat
gatgttagttggagtccgaacgatgagcgttttgtgacttgtggagatgatgggcttgtc
aagatttggagctatagagaagccaaggaagaaagaagtctgagtggccacggttgggat
gtgagatgcgtcgactggcaccccacaaagggtcttatcgtttccggttccaaagacatg
ctcgtaaaattttgggacccacgaacaggcaaagatctctctacactccactcttccaaa
tccaccatcaacacatgccgatggtctcccgatggccatctcgtggcgacagccggccaa
gattccgtcattcgcctctttgacattcgtacctttcgcgagctggaagtcttaaagggc
cacgaaaaagaagtcaactgcatcgaatggcacccgatccatcactctctcctagtttcc
ggcgacgctctcggcactatcaactacttttccctcctctcccccactccctctacaccc
atcaccacgctttcagccgctcatgaggacgcagtcttctccctctctttccatcccctt
ggccatattctctgttcgggatcaaaggactttacagcgagattctggtgtcgtgcaaga
ccgccggggggacaagaattcgataaatggcatcttaccgaggaaggcgctgcccaaaaa
gaactggaacgcatcacaaagcgtgaatgggggacgaacgcccctcctgcgaacgctgca
ggcggtggcggcggcggcggcggcgataagcagcaagtcgctttacccggtttgtccaac
ctcgttgccgctgtcaacagcgtcaagaccggcccgacgacgacaggcggagggccatcc
ggtcttccaggactgggtgcgcccaatgtccatgctggcaccccgccatcgcgggtatcc
accccttcgtccatgggacctcccggtcctggtgcccaaggacaagcacaaggcggtcag
ttcccacgaggaaggtcggcgcttcctagtcagaacgatatgcttcggcataatcacggc
tcgcgtggtgggtttgcagatcgggataggaacgggggaggagacagagggggaatggat
agagatagagattcacgagggggaagacaggatccaagaggtaatcagatgtatggccgt
gggccagggggacctcctcccggtcctccaccaggtcaagggggatacaattacccccct
gctcctcccaactatcccccttacccgccgtcatcctaccctcctccgcccaacaaccaa
cccggctatccgcccgcacccaattacgctatgccccctggacccggtgctcctcctcaa
agttatccttataatcgacctcctcagggaccccctcagaataataatccaggtggccaa
ggaaattacggcgcttccgcttccggcgggtatggccagtacggcggtggtggtggtggt
ggaggaggaggagggtacggtcgggatggacggagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (43)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (58)   

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