KEGG   Cryptococcus neoformans var. neoformans JEC21: CNC02960
Entry
CNC02960          CDS       T00243                                 
Name
(RefSeq) ATP dependent helicase, putative
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03013  Nucleocytoplasmic transport
cne03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CNC02960
   03015 mRNA surveillance pathway
    CNC02960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cne03019]
    CNC02960
Enzymes [BR:cne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CNC02960
    5.6.2.5  RNA 5'-3' helicase
     CNC02960
Messenger RNA biogenesis [BR:cne03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     CNC02960
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CNC02960
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII UvrD-helicase SLFN-g3_helicase DEAD AAA_16 AAA_22 Helicase_RecD nSTAND3 PhoH ATPase AAA_25 Ribosomal_S13_N UvrD_C_2 AAA
Other DBs
NCBI-GeneID: 3256515
NCBI-ProteinID: XP_024512413
Position
3:join(951379..951411,951489..951709,951764..951800,951857..951995,952046..952127,952177..952431,952480..952814,952866..953032,953089..953698,953755..954464,954533..954710,954787..955325)
AA seq 1101 aa
MEFSNFEGASQYGPDIDDNTSLYSSIPPSVVTAPTISGDIASQLGDLNLGETTSGHAAAG
QVYIDDFDEEIERNSFGEGVEHACSYCGIHNPQCVVKCLHCNKWFCNSRGNTSASHIVNH
LVKAKHKEVILHKESALGDTIPECYNCGSKNVFMLGFIPAKSDTVVVLLCRQPCAALTSS
RDINWDTSQWSAIIDDRQFLSWLVKVPSEAEQLRARQISLAQISKLEELWRENPNAKLED
AEAQSGEEEMQPILLKYEDAYQYQNILGPLVKVEADYDKRMKESQTENDITIRWDMGLNQ
KRLAWFCMPKLESGEVRLAVGDELKLKFAGTTSSVGIKGLQAFNKAGWGSSGDAVWEGVG
SVVKIPNNASDEICLELRRNDGVPFDCTHGFSVDFIWKSTSFDRMQAAMKTFAIDEKSVS
GYIYHKLLGHEVEPQVLRTQMPKRFAAPNLPELNHSQMSAVKAVLQKPLSLIQGPPGTGK
TVTSASIVYHLAKMNPGQVLVCAPSNVAVDHLCEKIHQTGLKVVRLAAKSREALDSSVDF
LSLHSQVANADTHHELQKLIQLRNDQGELSQSDERKYKALVKACEKDILNAADVICTTCV
GAGDPRLAKFKFRTVLIDEATQSAEPECMIPLVMGCKQAVLVGDHQQLGPVIMNKKAARA
GLSQSLFERLVILGNHPIRLQVQYRMHPCLSEFSSNLFYEGTLQNGVTAPERLRKHVDFP
WPVADTPMFFHQNLGTEEISSSGTSFLNRTEASNVEKMVTKFFKSGVLPNQIGVITPYEG
QRSYIASYMQLHGSLKKDLYKEVEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGVVILGNPKVLSKHPLWLYLLSHYKEKGCFVEGPLSNLQPSMVQFSRPKK
SLAAAMDPFKRRETSAVEFLSKNMGHGQAQSAAANRFDPAYYRTHNPLSFIPSDAQSVVS
QAMTSSAFPLFGGVGGGVGGGGGGGKNKTYTGYASSVVSQQPIDGGNASAFAPPRAGQSQ
FDRFASIVGSAGSAGSAGAGGAGVGAGGGGGGGGGNVMMGKGRRLSIGSEAASASMYAYG
YKAGEDDTQSIAPSQAGMTEF
NT seq 3306 nt   +upstreamnt  +downstreamnt
atggagttttccaactttgaaggagcatcacagtatggtccggacatcgatgacaacact
tcattatactcgtcaattccgccttcagtagttacagcgcccactatcagtggcgatatt
gccagtcagctaggcgaccttaatctcggcgaaactacgtcagggcatgcagcagccggt
caagtctatatagacgattttgacgaggaaatagagcggaattcatttggagaaggggtc
gagcatgcttgcagctactgtggtattcataatccccaatgtgttgtcaagtgtcttcac
tgtaataaatggttctgtaattctcgtggaaatacatctgcttcgcatatcgtaaatcac
ctagtcaaggcgaagcacaaagaagtgatcctacacaaggaaagcgctcttggagatacc
atcccagaatgctacaactgtggcagtaaaaatgtgtttatgctagggttcattcccgcg
aaaagcgacactgttgtcgttttactctgccggcaaccttgtgcagccttgacgagttcc
cgggatatcaattgggatacctcacagtggtcagctatcatcgatgatcgtcagtttctc
tcttggctcgtcaaggtaccgtcagaggccgagcaacttcgagcgagacaaatttctttg
gcccaaatatcaaaacttgaagaactttggagagaaaatcccaatgcaaagcttgaagat
gcggaggcacagtctggcgaggaggagatgcagccgatcttgctcaaatatgaggatgcg
taccaatatcagaacattctcggtcctctggttaaagtcgaagctgattatgacaagcgt
atgaaagaatcccaaaccgagaatgatatcacgatacgatgggatatgggtcttaatcaa
aagcgtcttgcatggttttgcatgccgaaactcgaaagcggagaagttagattggcagta
ggcgatgagttgaagctcaaatttgccgggacgaccagcagcgtcggaattaaaggtctc
caggcgttcaacaaagcgggttggggaagttccggagatgcagtatgggagggagttggg
agtgtcgtcaagataccgaacaatgcatcggacgaaatttgcttggagcttcggagaaat
gacggagtgcctttcgattgcactcacggcttttctgtcgactttatttggaaatcgacc
agtttcgacaggatgcaggcggccatgaaaacgtttgcgatcgacgagaagagtgtgagc
ggctatatctaccataaattgctcggacacgaagtcgaaccccaagtgcttcgcactcag
atgcccaaacgttttgctgcccctaatcttccagaacttaaccactcgcaaatgtctgcc
gtcaaggccgtattgcaaaaaccgctgagtctcatccaaggccctccaggaactgggaaa
acggtgacttctgcttctatcgtatatcacctcgccaagatgaatcctggtcaggttctg
gtatgcgcgccttccaacgtagctgttgaccatctttgcgaaaagattcaccagacgggt
ctcaaggtcgtgcgattagcagccaaatcacgagaagcgcttgattcatcggttgacttc
ctctcccttcacagtcaagtagccaacgcagacacgcaccacgagttgcagaaactcatt
caactgagaaatgaccaaggagaattaagtcagagcgacgaaagaaagtacaaggcgttg
gtcaaagcgtgtgagaaggacattttgaacgcggcggatgttatctgtactacgtgtgtc
ggtgcgggtgatcccaggctggccaagttcaaatttagaacagttttgatcgatgaagct
actcagtctgccgagcctgaatgtatgatccctcttgttatggggtgtaaacaagctgta
ctggtgggcgatcaccaacaattgggaccagtcattatgaacaagaaagcagcacgcgct
ggtctttcgcaatccttgttcgaacggctcgtcatcctgggcaaccaccctatccgactg
caggtgcagtaccggatgcacccctgcctttccgagttttcatccaacctgttctacgag
ggcactttgcagaatggtgtcacggcgccagaaaggctgcgtaagcatgtagatttcccc
tggccagtcgcggacacgccaatgttcttccatcagaaccttggtacggaggaaatatca
tcaagcggaacatctttcctcaacagaaccgaagcttccaatgttgaaaagatggtgacc
aaatttttcaagtctggtgtcttacccaatcagattggtgttattacgccatacgaagga
cagcgatcgtacattgcgtcgtacatgcagctacatggctcgctgaaaaaggatctatac
aaagaagtcgaggtggcgagtgttgatgcgttccagggtcgtgagaaggattatatcatc
ttgagttgtgtgagaagcaacgagcaccagggtatcggatttttaaatgatcctagaaga
ctgaacgtggctcttacccgtgccaagtacggcgtggtgatcttgggtaatccaaaggtg
ctgagcaagcaccctctttggctttacctcctttcccactacaaggagaaggggtgcttt
gttgaaggccctctcagtaaccttcagccgagtatggtccagttcagccggccgaaaaag
tctttggcagcggctatggaccctttcaagagacgtgagacttctgcggttgaatttctc
agcaagaatatgggtcatggacaagcgcaatccgctgccgcaaatcgtttcgatccagcc
tattaccgtacccataaccctctttcgtttatcccgtctgatgcgcaatcggtagtcagc
caagcaatgaccagctctgctttccccttattcggtggtgttggcggtggtgttggtggt
ggtggcggtggtgggaagaacaagacgtatacgggatacgcttcaagtgtcgtttcccaa
caaccgatagacggcggtaacgctagcgcatttgcacctcctcgcgccggacaatcacaa
tttgacaggtttgccagtatcgtcgggtcggcggggtcggccgggtcggcgggtgcgggg
ggcgcgggtgtaggcgctggcgggggcgggggcgggggcgggggcaacgtgatgatgggg
aaggggaggcggctttcgattgggagcgaggcggcaagcgcgtcgatgtatgcgtacggc
tacaaggcgggtgaggacgatacgcagagtatcgcaccgagccaggctggtatgaccgag
ttttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (41)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (20)   
   Pfam (20)   
All databases (71)   

Download RDF
DBGET integrated database retrieval system