KEGG   Cryptococcus neoformans var. neoformans JEC21: CNK01430
Entry
CNK01430          CDS       T00243                                 
Name
(RefSeq) DNA polymerase epsilon, catalytic subunit a, putative
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
cne  Cryptococcus neoformans var. neoformans JEC21
Pathway
cne03030  DNA replication
cne03410  Base excision repair
cne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cne00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CNK01430
   03410 Base excision repair
    CNK01430
   03420 Nucleotide excision repair
    CNK01430
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cne03032]
    CNK01430
   03400 DNA repair and recombination proteins [BR:cne03400]
    CNK01430
Enzymes [BR:cne01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CNK01430
DNA replication proteins [BR:cne03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    CNK01430
DNA repair and recombination proteins [BR:cne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      CNK01430
SSDB
Motif
Pfam: DUF1744 DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2 NAPRTase_C RNA_POL_M_15KD
Other DBs
NCBI-GeneID: 3254656
NCBI-ProteinID: XP_567821
UniProt: P0CN26
Position
11:join(417347..417658,417730..417855,417904..417999,418073..418382,418436..418740,418802..419007,419063..419354,419414..419599,419655..422777,422828..424342,424392..424481,424542..424668,424724..424788)
AA seq 2250 aa
MPSRGSFRGRGRGSGSGFGSNTRFTGRRRGRGGGGGGGGVAYGIDRRPATSTNQANREDG
TAATEKFEEVKVYDEIDEKIGFWRFESVRAEGEEKVGWLVNMHQTLVPSDVHPGGLAAVD
YYFIQDDGGSFKVSIPYEPYFYLTCRGGTESIVEEWLLKRYEGIIIRIEREKKWDLSLPN
HLLSAPPVFLKLFFHNTADLQTIRRDLLPLARSNSEKFTAVDAYADVVSAEAAANGHGDD
ENRAWGAEDDTKKKKDKEPSECIIEVREHDLAYHLRVAIDLNIRVGLWYTVTSRTGVITL
ERIPDRVKRADPVVMAYDIETTKQPLKFPDQQTDQIMMISYMIDGMGYLITNREIVGEDI
DDFEYTPKDEYPGEFTVFNEPDEPAVIRRWFEHIRDSKPTVIATYNGDSFDFPFVDARAK
IHGISMYEEIGFKPDIEEEYKSRSTMHMDCFRWVKRDSYLPQGSQGLKAVTTAKLGYNPI
ELDPELMTPYAIEQPQILAQYSVSDAVATYYLYMKYVHPFIFSLCNIIPLSPDEVLRKGT
GTLCETLLMVEAYDAHIIMPNRHEDPHGVTYEGHLLASETYVGGHVEALEAGVFRSDIPT
HFKIVPSAIQELIDDLDAALRFSLIEEGQVKLEDVENYDEVKQQIQTALETMRDEPNRFD
NPLIYHLDVAAMYPNIMLSNRLQPDSVKEEADCAVCDYNRPDKKCDRRMEWAWRGEYFPA
KRDEVNMVRYALEQETFPPKRPYDPKRRFVDLTPTEQSALLHKRLGDYSRKVYKKTHDTK
IVTKTTIICQRENSFYIDTVRAFRDRRYEYKGLHKTWKKNLDKAFEEGGAVATVDEAKKM
IVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGITCLTGATIIQMARQLVEQIGRPL
ELDTDGIWCMLPGVFPEDFNFKLKNGKKFGISYPCTMLNHLVHAQFTNDQYHELVNNDSG
TYNVKKENSIFFELDGPYKAMILPSSKEEDKLLKKRYAVFNPDGSLAELKGFEVKRRGEL
QMIKIFQSQIFDKFLLGKTTEECYAAVATVADQWLDILQSKASSLHDDELVDLIAENRSM
SKTLAEYAGQKSTSISTARRLAEFLGEQMVKDKGLSCRFIISAKPNGAPVTERAVPVAIF
TAEEPVKRHYLRKWLKDNSLTDFDLRTILDWDYYTERLGSVIQKLITIPAALQKVPNPVP
RIRHPDWLYKRIATKEDKFQQHKITDMFTKLKDMEDLGDGQKKVGPKLAVVRRRNRKEQE
KESEVEEVPPEPEYDYAGYIRIMKKKWRKQRQEKARARKSGLRQDGTISSMLRTQTSSMN
SKQWDVIQIASTNRPGEFKLWLAIDGTFQSVRLKVPREFYLNFKEDPEPQMLATDRYEAV
EVVRTLPRGQPARHLYKLSVDEVLFMEGESHFSTLINNPNVDGAFELQVPLVVRALLSLG
TSCALRSNILGGLNRGLDKGFDLVDLERSGNLSRRKYLNEGRGIRYHFLFHAVADQRHII
GLFSPDSTNASIYLVDRAKNRQQLPNPLKFYTDRVERAERGVFSYPDMLDFTTSYHSSES
SAFKALGKDLQAINHGLNVIALCSPFEHSYYQAKAPVYSNFPFITYRLGKEEDPGLMWLL
QTSRRMIGLYLRLSSWLKEQIQIASHFDVPIGNLGADIAVFLADIEFARRLKQQDMLIWW
SSTPRPDLGGSEEDANSSEDLVSPHISNRGCYSSTVLEMEVSDLAINAVLQSALVNEMEG
SGTGSLAFDSASHNLDEYAKGAVNTSVMLGDAVLSTQTFGVLKSMLRAWYADKARAHVKG
DSLSPAEIVVDQFWRWISSSTSSMFEPALHRFLHGLMRKTFLQLLAEFKRLGTQVVYADF
GRVFLLTSKPDAGSAFAFAKYLVAAANSQELFRHLIIDVAQFWNYLAWMDVANFGGVKVS
PETAASREPPAKRFEISMDWNIQSFLPGTLQPVFERNVASFIFSLYSAKRSSSDGREPLR
VIHSLNIDQPGTEATSTMNPTKEKEKKAASKSISQTLTRRLLSDIAAVKRQQAAVHLEPE
EAYTLAFPDLPGARSKRINPTLELIKAITEVYSLASEHSIEVQILKRNLLDLIGVKEFSS
DAAFNPPCESIEVPMVICKKCNAIRDVDLCRDPDRLPSVNPDSGEMLEPARKNWVCHKCD
SEYDRFQIEQPLIEMVTKTITNYQIQDVICLKCSQTKSDNLAATCKCGGGFRTTSNRNEL
KTKLKMIKSVCDYHKLPFAGSYVEETLSRW
NT seq 6753 nt   +upstreamnt  +downstreamnt
atgccctccagaggatctttcagaggacgcggtcggggatccggatccggatttggaagc
aacacccggtttacaggcaggcgacggggtcgaggcggaggcggcggcggcggtggtgtc
gcatatgggatcgaccgccgccccgctacatctactaatcaagctaatcgtgaagatgga
accgccgccaccgaaaaatttgaagaggtcaaggtctacgatgagattgatgaaaagatt
ggattctggaggtttgagagtgtgagggcagagggcgaagaaaaggtcggctggttggtc
aatatgcaccagacacttgtgccgagcgatgtgcaccctggaggtctagcggctgtcgac
tactatttcatccaagatgatggaggctcattcaaggtgtccataccttacgagccgtat
ttctatcttacctgtcgggggggaacagagagcatcgtcgaggaatggcttttgaaacga
tatgaaggtatcatcataaggatagaaagagaaaaaaagtgggatctaagcctcccaaac
caccttttatcggcacctccagtattccttaaactgttcttccacaatactgccgatctc
cagactatccgacgtgacttgctacctcttgcacgcagcaactctgaaaaattcacggcc
gttgatgcgtatgccgatgtggtcagtgcggaggcggcagccaacggtcatggggatgac
gaaaacagagcatggggtgcagaggacgacacgaaaaagaagaaggataaagagccgtca
gaatgtatcattgaagtccgagaacatgacttggcgtaccatttacgagtggcaatcgat
ctcaatattcgtgtcggactctggtataccgtcacctcccgcacgggcgttataacgctg
gaacgaatacccgatcgtgtcaagcgtgcggacccagtcgtcatggcgtatgatatcgaa
acaacaaagcagcccctcaagtttccagatcaacaaacggaccaaatcatgatgatttct
tacatgattgacgggatgggctacttgatcacgaatagagagattgtgggtgaagacatt
gatgattttgaatatacaccaaaggatgagtatcccggtgaattcacagtgttcaacgag
cctgacgagcctgcggttatccggagatggtttgaacatatcagagattccaagccaacc
gtcatcgcaacgtataacggtgatagtttcgattttccttttgtcgatgcaagggccaag
atacatggaatcagcatgtacgaggaaattggattcaaaccagatatcgaggaagaatac
aagtcccgatcaaccatgcacatggattgtttcagatgggtcaaacgagactcgtatctt
ccacaaggtagtcagggcctcaaagctgtgactactgccaaactcggatacaaccccatc
gaactcgacccagaattaatgacgccgtacgccatcgagcaaccccaaatattggctcag
tattccgtctccgacgcggtcgccacatactacctctacatgaaatacgttcaccccttc
atcttttcgctgtgtaacatcatccctttaagtccagatgaagtgttgcgtaaaggaaca
ggtacgctctgtgaaaccttattgatggttgaagcttatgatgctcatatcattatgcct
aaccgtcatgaagatccccacggagtgacatacgagggccacctactcgcgtctgaaaca
tatgtcggaggccatgttgaggctctggaagctggtgtgttcaggagcgacatcccgact
cacttcaagatcgtgccaagtgccatacaagaacttattgatgatctcgatgcggcactc
cgattctccttgattgaagaaggtcaagtcaaactcgaggatgtagaaaactacgacgag
gttaaacagcaaatccagaccgctctcgagaccatgcgggacgaacccaatcgcttcgac
aaccctttgatctaccatcttgatgtcgccgccatgtaccccaacatcatgttgtcaaac
cgtctacagcccgattcagtcaaagaggaagcagattgcgcagtgtgtgactacaatcga
cctgacaagaagtgtgatcggcgtatggaatgggcatggagaggagaatacttccccgcg
aaaagagacgaagttaacatggtacgctatgctctggaacaggaaacgttccctccaaaa
cgtccatatgacccaaagcgccgttttgtcgacttgacgcccacagaacaatctgccctt
cttcacaagcgtttaggggactattctcgaaaggtatacaagaagactcacgacacgaag
attgtcaccaagacgacaatcatttgccagcgagagaactcgttctatatcgatactgtc
cgggcattccgagaccgtcgttacgagtacaagggtctccacaaaacctggaagaaaaac
ctcgataaggcatttgaagaaggtggcgcggttgcaacagtagatgaggccaagaagatg
attgtactctacgactcgctccagcttgcacacaagtgtatcctcaactctttctacggt
tatgtcatgcgaaaaggagcgaggtggtattcgatggaaatggcaggcattacttgtctg
actggtgccactatcattcagatggcaaggcagcttgttgagcagattgggcggccgcta
gagctggatacagacggtatctggtgcatgttgcctggtgttttccccgaggacttcaac
ttcaagctcaagaatggcaagaaatttggcatctcgtatccttgcaccatgctcaaccac
cttgtccacgcacagttcaccaacgaccagtaccacgaacttgttaataacgactctggt
acgtacaatgtcaagaaagaaaactcgatcttcttcgaactggatgggccttataaagct
atgatccttccgtcttcaaaggaagaggacaaattgctcaagaagagatatgccgtcttc
aaccctgacggctccctcgcggagttgaaaggattcgaagtgaagcgtcgaggtgaactt
caaatgatcaagatcttccaaagtcaaatcttcgacaagttcttgctgggcaagacgacc
gaggagtgctacgctgccgtcgccaccgttgccgaccaatggctcgatatccttcaaagc
aaggcctcaagtcttcatgatgatgaattggtcgacttgattgccgagaaccgtagcatg
tcgaaaacactggccgagtacgctggtcaaaagtctacttcgattagcacagcaagaagg
ctggcggagtttttaggcgagcaaatggtcaaggacaaaggtctttcttgtcgattcatc
atctctgcgaaacctaacggtgcgccagtcacggagcgagctgttcctgttgcgatcttc
acagctgaagagcccgtgaaaaggcattatctccgcaaatggctaaaggacaacagtctt
acggactttgatcttcgtactattctcgactgggactattacactgaacgtcttggttcc
gtcatccagaagctcatcaccatccccgccgcccttcaaaaggtaccaaaccctgtacct
cgtatccgacaccccgactggctttataaacgtattgccaccaaagaagacaagttccaa
cagcacaagatcactgatatgttcacaaagttgaaggatatggaagatttgggagacgga
caaaagaaagttggacccaaactggctgtggttaggagaagaaacaggaaggagcaagag
aaggaatcggaggtcgaggaagtcccacccgaacccgaatatgactatgctgggtatatc
aggataatgaaaaagaagtggcgcaagcaaaggcaggaaaaagctcgagcgcgcaagtct
ggtcttcggcaagacggcactatttcctccatgcttcgcacgcagacgtctagtatgaat
tcaaagcaatgggacgtcatccagatcgcctccaccaaccggccgggagaattcaaactc
tggcttgccattgatggcaccttccaaagcgtgcgactgaaggtaccccgagaattctat
cttaacttcaaggaagatcccgagcctcagatgctagctacagaccgctatgaggcggtg
gaggtcgtcaggacattacctcgaggacagcctgccagacatctttacaagctgtcggta
gatgaagtgcttttcatggaaggagaatcgcacttttccactttgatcaacaacccgaac
gtggacggtgcttttgagctccaagttccccttgtcgttcgcgcactcctcagccttggg
acttcatgcgccttacgctctaatatcctggggggtctcaaccgcggcctggacaaaggt
ttcgatctcgttgatttggaacgctcaggaaacctgtctaggcgcaagtatctcaatgaa
ggtcgcgggattaggtaccacttcctcttccatgccgttgctgaccaacgacatatcatt
ggccttttctcccccgattccaccaatgcttctatctaccttgtcgatcgcgccaagaac
cgtcaacagctgcctaatccgttgaaattctataccgaccgagttgagcgtgcagaacgt
ggtgtcttctcttaccccgatatgcttgacttcactacctcatatcattcctcagagtca
tccgcattcaaggcccttgggaaagatctccaagccatcaaccacggtcttaatgttatt
gccctttgttcgccatttgagcattcttactaccaggcaaaggcaccagtctattccaac
ttcccgttcataacatatagactagggaaagaggaagacccaggtctaatgtggctgttg
cagacgtcgaggaggatgattggattgtacttgaggctgtccagctggttgaaggagcag
attcaaattgcatcacactttgatgttcctatcggcaacctgggtgccgatatagcggtg
ttccttgcggatatcgagttcgcacgtagactcaaacagcaagacatgctcatttggtgg
tcatcgactccccgaccagatcttggtggttccgaagaagatgctaactctagcgaagat
ctcgtttctcctcacatctcaaaccgcggctgttactcatccaccgtgctggaaatggag
gtgtccgatcttgctattaacgctgtccttcaatcagctctcgtcaacgaaatggaaggt
tcaggaactggttcgctcgcctttgattcggcatcccataaccttgatgagtacgccaag
ggtgctgtcaacacatcggtcatgcttggagatgccgtactttccacccaaacctttggg
gttcttaagtcaatgcttcgtgcatggtatgctgacaaggctcgagctcatgtcaaaggc
gactcattgtcgcctgccgagatcgttgtcgatcaattttggcgttggatcagttcatca
accagcagcatgtttgagccagctctccatcgtttccttcatggcttgatgcgcaagaca
ttcctgcagctcctcgcagaattcaaacggctgggtacccaagtcgtctacgcggatttc
ggccgtgttttccttctcacctccaaacctgatgctggcagcgcgtttgcatttgcaaaa
tacctagttgccgctgccaactcacaagaattgttccgccatctcatcatcgacgtcgcc
cagttttggaactaccttgcgtggatggatgttgccaatttcggcggtgtcaaagtctca
cctgaaactgcggcgagtcgagagccgccagcgaaaaggttcgagattagtatggactgg
aacatccaatcctttttgcccggcactcttcaacctgtgttcgaaagaaatgtggcgagc
ttcatattttccctttacagtgctaagcgctcgtccagcgatggcagagagcctcttaga
gtcatccacagtctcaacattgatcagcctggtacagaagccacatcaacaatgaatcct
acgaaagaaaaggagaagaaagctgcctccaagagcatctcacaaactcttacccgtcga
cttctttctgatattgctgcggtcaagcgtcaacaagctgctgtgcaccttgagccggaa
gaggcctacaccctggcttttcccgacttgcctggagctaggtcgaaacgcattaatccc
accctcgagcttattaaggccattacggaggtctattctctcgcttctgagcatagcatt
gaagtgcaaattctcaagcggaacttgctggacttgattggtgtcaaagagttctcgagc
gatgcggcctttaatcctccatgcgaaagtattgaggtgcccatggtgatttgcaaaaag
tgtaacgcgatcagagacgtcgacctatgcagagatcccgacaggttgcctagtgttaac
ccagatagcggtgaaatgttggaaccagcgagaaagaactgggtgtgtcataaatgtgac
tctgaatatgatcgattccagatcgaacaacctctcatcgaaatggtcaccaagacgatc
accaactaccaaatacaagacgtgatctgcctcaaatgttcgcaaacgaaatcggacaat
cttgcggcgacctgcaaatgtggtggaggatttaggacgacgtcaaacagaaatgaactg
aagacgaagctgaaaatgattaagagtgtatgtgattaccataaattgccctttgctggt
agttatgtggaagagactttgagtcggtggtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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