KEGG   Calditerrivibrio nitroreducens: Calni_1779
Entry
Calni_1779        CDS       T01364                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cni  Calditerrivibrio nitroreducens
Pathway
cni03030  DNA replication
cni03410  Base excision repair
cni03420  Nucleotide excision repair
cni03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Calni_1779
   03410 Base excision repair
    Calni_1779
   03420 Nucleotide excision repair
    Calni_1779
   03430 Mismatch repair
    Calni_1779
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cni03032]
    Calni_1779
   03400 DNA repair and recombination proteins [BR:cni03400]
    Calni_1779
Enzymes [BR:cni01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Calni_1779
DNA replication proteins [BR:cni03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Calni_1779
DNA repair and recombination proteins [BR:cni03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Calni_1779
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Calni_1779
   MMR (mismatch excision repair)
    DNA ligase
     Calni_1779
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Calni_1779
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH DNA_ligase_ZBD BRCT_2 RNA_ligase
Other DBs
NCBI-ProteinID: ADR19684
UniProt: E4TG97
Position
complement(1841437..1843404)
AA seq 655 aa
MSWTKTDYDRLVKELNHHCIRYYLLNDPAISDAKYDNLYKQLRKIEEEHPEWISPDSPTQ
RVGFKVTSGKTIKHLYKMFSLDNIYSEGELNDFFSKVYKVVGSDIDYVVEPKIDGAAVSI
VYEDGVLSYAASRGDGVEGEDITHNIKTIRELPVSISEKNRIVLRGEVYLSKEQFNKINR
ERKNAGESLFANPRNAAAGTLKILDPAITARRGLSIFIYSIEEGRRYDNHFDDLKWLKSI
GFPINEHIFVGKYKDIKGYIDKIESLRKNLPYDIDGAVVKVNKYEVRSILGETIKYPKWA
IAYKYEAEQVTTILKDVIFQVGRTGIVTPVAVLDTVNISGSNVSRASLHNEDEIKRLGVK
IGDTVFVEKSGEIIPKVIKVVPEFRTGGEKEIIFPSNCPSCGDKLFKIDAYWKCLNLDCP
DRVKGSITHYASRDAMDIRGLGEKNVERFYDLGLLRSIPDIYRLEYDDLVNLEGFGELSA
DNLLKSIEESKRREFYRLIYALGIDGVGIKMAQTLALHFKSIDSIMAASIDDLMDIYGIG
DEVGRSIFEFFRERRNIEMLQFLRRVGVNMVQKEVMGDKLSGVTFLITGTLSKPRKFYED
IIIKNGGKILSGVSKNLNFLIVGENPGSKLEKAKSLGVEVITEEEFFEKFEIRGD
NT seq 1968 nt   +upstreamnt  +downstreamnt
atgagctggacaaaaactgattatgataggcttgtaaaggagctaaaccatcactgcata
aggtactatctcctaaatgatcctgcgatatctgatgctaaatatgataatctctataaa
caattacgtaagatagaagaggagcatcccgagtggatctcacctgattcacccacacaa
agggttgggtttaaagtaacatccggtaaaacgataaagcatctctataaaatgttttcc
cttgataacatatacagcgaaggggagttgaacgactttttttcaaaagtgtataaagtg
gtgggaagtgacatcgattatgtggtggagccaaaaatagatggggctgctgtttctatc
gtgtacgaagatggggttttaagttatgctgcaagtcgtggggatggtgttgaaggtgaa
gatataacccacaatataaaaacgataagagagttgccggtttctatttctgaaaagaat
aggattgtgttacggggtgaggtgtatctatccaaagaacagtttaataaaatcaaccgg
gaaagaaaaaacgcaggcgagtctctttttgcaaatccaagaaacgccgccgctggtaca
ctaaaaatacttgatcctgccattacagccagaaggggtctttccatcttcatatattcc
attgaagagggaagaagatatgataaccattttgacgatctaaaatggcttaagtcaata
ggttttccaataaatgaacatatatttgtaggtaagtataaagacattaaagggtatatt
gataagattgagtcactcagaaaaaaccttccgtatgatatcgatggggcggtggtgaag
gtaaataagtacgaagttagatctatcctgggtgaaacgataaaatatccaaagtgggca
attgcctacaaatatgaagcggagcaggtgaccacaatattaaaggatgtcatatttcag
gtgggtagaacaggtattgtaacccctgtggcggtacttgacacggtaaatatatccggc
agtaatgtatcaagagctagtttacataatgaagacgagattaaaaggctgggtgtgaaa
attggcgacacagtatttgtggaaaaaagtggggagattataccaaaggtcatcaaggta
gtcccggagtttaggacagggggagaaaaggagatcatctttccatcgaattgtccatcc
tgtggtgataaacttttcaaaatagacgcctattggaaatgcttgaatctggattgcccc
gatagagttaaggggagtattacccattatgccagtagagatgcaatggatattcgggga
ctgggggagaagaatgtggagagattttacgacctgggtcttttaaggtcgattccagat
atctatagattagaatatgatgaccttgtgaatcttgaagggtttggtgaactatctgct
gataatcttttgaaaagtatagaggaaagcaaaagaagagaattctacaggctcatatat
gcgcttggtatagatggagttggtataaaaatggcgcagactctggcattacatttcaaa
agtattgactctataatggctgcatctatcgatgatttaatggatatttatggaattggt
gatgaagtgggtagatcgatatttgagtttttccgagaaagaagaaacatcgagatgcta
cagtttttacgtagggtcggtgttaatatggtgcagaaggaggtcatgggagataaactt
tcgggggttacatttctcatcaccggaacactttcaaaaccgagaaaattttatgaagat
attattataaaaaatggtggaaagatactaagtggagtaagcaaaaatctaaacttcctg
attgtgggggaaaatcccggaagtaagctggaaaaggcaaagtctttaggtgtagaagtt
attacagaagaggaatttttcgaaaaatttgagattagaggtgattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (54)   

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