KEGG   Clostridium novyi: NT01CX_1417
Entry
NT01CX_1417       CDS       T00431                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
cno  Clostridium novyi
Pathway
cno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NT01CX_1417
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cno03019]
    NT01CX_1417
   03016 Transfer RNA biogenesis [BR:cno03016]
    NT01CX_1417
Enzymes [BR:cno01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NT01CX_1417
Messenger RNA biogenesis [BR:cno03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NT01CX_1417
Transfer RNA biogenesis [BR:cno03016]
 Prokaryotic type
  tRNA degradation factors
   NT01CX_1417
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 CSD DUF5697
Other DBs
NCBI-ProteinID: ABK60407
UniProt: A0PYP7
Position
571795..574032
AA seq 745 aa
MNIKSIILGFMKEQAYKPMDIQELAKIFGISKRDMKSFKELIKTMEKEGSIIKTRTNHYG
IPEKMGLVVGRLQGHQRGYGFVIPDDDSPDVFVISSYMNGAMHGDRVVAQVLKEENNGKR
REGEIIRVTERANETIIGVFEASKNFGFVVPEEKRIHQDIFIPKEHTKGAKNGDVVIVNI
TQWPEKRRNPEGRVVEVLGKKGEKGIDILTIIKKYKLPEEFPAKVQSYVDNIPQEIDPEE
AKGREDLRDVVMVTIDGEDAKDLDDAVSIEKLDNGNYLLGVHIADVSHYVKEKSPLDKEA
LKRATSVYLINKVIPMLPKELSNGICSLNPKVDRLAMTCFMEINNKGKVVNYRITKSVIK
TNERMTYTDVTKMLRDKDEATIEKYKDLYKYFKLMEELCEILYNKRISRGAIDFEFEESK
IILDDNGKPIDVKPYERAIANRIIEEFMLVCNETVAEHMYWTKIPFVYRIHEDPDEEKLQ
KFREFAYNLGYFIKPTKEVHPKALQEIIESARGKKEETVVNTLLLRSLKQARYAPQCVGH
FGLAAKYYCHFTSPIRRYPDLIIHRIIKESLDGLIDEKRFKSLENKVDYASVQSSDMERL
AMEAEREVDDLKKAEYMSEKIGEEYTGIVSSVTNFGMFVQLPNTIEGLVHISTMDDDYYV
YDEDHLCLVGEKHKNVYRLGDEVKIKVDRVDLGSYEIYFDLIKDEKEDEELPKIPTEEIN
KIGEKLSQSEEDERLNKEIDEMLNS
NT seq 2238 nt   +upstreamnt  +downstreamnt
atgaatataaaaagtataattttaggttttatgaaggaacaagcatataagccaatggat
atacaagaacttgctaaaatatttggaatatctaaaagagatatgaaaagttttaaagag
ttaattaaaactatggaaaaagagggcagtataattaaaacaagaacaaatcattacgga
ataccagaaaaaatgggacttgtagtaggaagacttcaaggacatcaaaggggatatgga
tttgttatacctgatgatgatagcccagatgtttttgtaatttcatcatatatgaatgga
gctatgcatggagatagagtagtagcgcaagttcttaaagaagagaacaatggtaaaaga
cgtgaaggtgaaataataagagttacagaaagagccaatgaaacaataataggtgttttt
gaagctagtaagaactttggatttgttgtgccagaggaaaaaagaatacatcaggatata
ttcattccaaaagaacataccaaaggtgctaaaaatggagatgtagtaatagtaaacata
actcagtggcctgaaaaaagaagaaacccagaaggtagagttgttgaggtattaggtaaa
aaaggtgaaaaaggaatagatatattaacaattataaagaaatacaaacttccagaagaa
ttcccagcaaaagttcaaagctatgtagataatattcctcaggaaatagatccagaagaa
gcaaagggaagagaagatttaagagacgttgtaatggttacaatagatggtgaagatgct
aaagacttagatgatgctgtatctatagaaaagcttgacaatggaaactatcttttagga
gtacatattgcggatgtatctcactatgttaaagaaaaaagtccattagataaggaagcg
ttaaagagagctacttctgtatacttaataaataaagtaataccaatgctaccaaaggaa
ttatctaatggtatatgtagtttaaatcctaaagtagacagacttgcaatgacttgcttt
atggaaattaacaataaaggaaaagttgttaactatagaatcactaaaagtgtaataaag
acaaatgaaagaatgacatacactgatgtaacaaaaatgcttagagataaagatgaagca
accatagaaaagtataaagatttatataaatactttaagctaatggaagagttatgtgag
attttatacaacaagagaatctcaagaggtgcaatagattttgaatttgaagaaagtaaa
ataatcttagatgacaatggaaaaccaatagatgtaaaaccatatgaacgtgctattgca
aatagaataatagaagaattcatgcttgtatgtaatgaaactgtagcagagcatatgtac
tggactaagattccttttgtatatagaattcacgaagatccagatgaagaaaaacttcaa
aagttcagagagtttgcatataatttaggatactttataaaacctactaaagaagtacat
ccaaaagcacttcaagagataattgaaagtgctagaggtaaaaaagaagaaactgtagta
aatacattacttcttagatcattaaaacaagcaagatatgcaccacaatgtgtaggtcac
tttggtcttgcagcaaaatattattgtcactttacatcacctataagaagatatccagac
ttaataattcatagaataataaaagaatcattagatggacttatagatgaaaagagattt
aaaagcttagaaaataaagttgattatgcatctgtacaatcatcagacatggaaagactt
gcaatggaagctgaaagagaagttgatgacttaaagaaagctgaatatatgagtgaaaag
attggagaagaatatactggtatagtatcttctgtaactaactttggaatgtttgtgcaa
ctacctaatacaatagaaggattagttcacataagtacaatggatgatgactactatgta
tatgatgaagatcacttatgtttagtaggagaaaaacataaaaacgtatatagattaggt
gatgaggtaaaaataaaagttgacagagttgacttaggatcttatgaaatatactttgat
ttaataaaagatgaaaaagaggatgaagagttacctaaaattcctacagaagaaataaat
aaaattggtgaaaagttaagccaatctgaagaagatgaaagattaaataaagagatagat
gaaatgctaaatagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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