KEGG   Corynebacterium pseudotuberculosis 1/06-A: Cp106_0314
Entry
Cp106_0314        CDS       T02052                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
cod  Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cod00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Cp106_0314 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cod03021]
    Cp106_0314 (rpoB)
   03400 DNA repair and recombination proteins [BR:cod03400]
    Cp106_0314 (rpoB)
Enzymes [BR:cod01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Cp106_0314 (rpoB)
Transcription machinery [BR:cod03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Cp106_0314 (rpoB)
DNA repair and recombination proteins [BR:cod03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Cp106_0314 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AER68418
Position
328216..331716
AA seq 1166 aa
MLEGPILAVSRQTKSVADIPGAPERFSFAKITEPIEVPGLLDIQLDSFAWLIGTPEWRAR
QQEELGESVRITSGLEEILEELSPIQDYSGNMSLSLSEPRFEDMKNTIDECKDKDINYSA
PLYVTAEFINNETQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVRSPGVYFDQTI
DKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITER
FGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLDNAFFRAKRYDLAKV
GRYKVNRKLGLGGDNEGLMTLTEQDIATTLEYLVRLHAGESTMVAPNGDVIPVDTDDIDH
FGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFG
TSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHASHYGRMCPIETPEGP
NIGLIGSLASYARVNSFGFIETPYRKVENGVLTDQIDYLTADEEDRFVVGQAHVEVDAQG
KITADSVTVRVKNGDIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPFVGTGMERRAAYDAGDLIINKKAGAVENVSADFITVMADDGTRETYML
RKFERTNQGTCYNQIPLVNLGDRVEAGQVLADGPGTHNGEMSLGRNLLVAFMPWEGHNYE
DAIILNQRVVEEDILTSIHIEEHEIDARDTKLGAEEITREIPNVSEDVLKDLDERGIVRI
GADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRR
FSREDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILPQEDMPFMPDGTP
VDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDPEDPANVELLKTLPEDLYDVPAGSL
TATPVFDGATNEEVAGLLANSRPNRDGDVMVDANGKAQLFDGRSGEPFPYPVSVGYMYML
KLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSADGTPMELSGSD
DDEFDQAGASLGINLSRDERSDADIA
NT seq 3501 nt   +upstreamnt  +downstreamnt
gtgctggaaggacccatcttggcagtctcccgccagaccaagtcagtggccgacatcccc
ggggctcccgaacgtttttcgttcgccaaaattacggaacctattgaggtcccgggactt
cttgatattcagctagattccttcgcatggctcattggtacgcccgagtggcgtgctcgt
cagcaggaggagctaggtgaaagcgtccgcataaccagcggactggaagaaatcttggag
gagctatctccgattcaggattattccggaaacatgtcattgtctctctcggagccccgc
ttcgaggacatgaagaacactatcgatgagtgtaaagacaaagacattaactattctgcg
ccgctttatgtgactgcagaatttatcaataatgaaactcaggagatcaagtcccagact
gtcttcatcggcgatttcccgatgatgaccgacaagggaaccttcatcgttaacggcact
gagcgtgtcgtggtctcccagcttgttcgttcgcctggcgtttacttcgaccagacgatt
gataagtccaccgagcgtccgctgcactctgtgaaggtgatcccttctcgcggtgcgtgg
ttggaatttgacgtggataagcgcgacaccgttggtgtccgtattgaccgcaaacgtcgc
cagccggtgaccgttcttctcaaggctcttggttggaccactgagcagatcacggagcgc
tttggtttctccgaaattatgatgtccacgcttgagtcggacggtgtggctaacaccgat
gaggctctgctggagatctaccgcaaacagcgtccgggtgagcagccgactcgtgacctc
gcgcagtcgctgctggataacgccttcttccgcgcgaagcgttacgaccttgccaaggtt
ggacgctacaaagtgaaccgcaaactcggtctcggtggggacaacgagggtctgatgact
ctcactgagcaggacatcgcaaccactctcgagtacctcgtgcgtctccacgctggtgag
agcactatggttgcacccaatggtgatgttatccctgtggatacggatgacattgaccac
tttggtaaccgtcgtctccgtacagtcggagaactgattcagaaccaagtccgcgtgggt
ctgtcccgcatggagcgcgtggttcgtgagcgcatgactacccaggacgcagagtctatt
actcctacctccttgatcaacgtgcgcccggtttctgctgccatccgcgagttctttggt
acctcccagctctcgcagttcatggatcagaacaactccttgtctggcctcacacacaag
cgccgtctctctgctctgggcccaggcggcctgtcgcgtgagcgcgctggcattgaggtt
cgagacgttcacgcttctcactatggtcgtatgtgcccgattgagactcccgaaggtccg
aacattggtttgatcggttccttggcttcctatgctcgggtaaactctttcggcttcatc
gagaccccctaccgcaaggtggaaaacggtgttctcaccgatcagatcgattacctcacc
gcagatgaggaagatcgttttgtggttggtcaggctcacgtcgaggtagacgcacagggc
aagatcaccgcagatagcgttactgttcgtgtgaaaaatggtgacatccaggtcgtggca
ccggaaagcgttgattacctagacgtttccccacgccagatggtctctgtggctaccgcc
atgattccgttccttgagcacgacgacgctaaccgtgccctcatgggcgcgaacatgcag
cgtcaggctgtgccgctggttcgttcagaagccccgtttgtgggaactggcatggagcgt
cgtgctgcttatgacgccggcgacctcattatcaacaaaaaggctggcgctgtagagaac
gtctccgctgatttcatcaccgtgatggctgatgacggcacccgtgagacctacatgctg
cgcaagtttgagcgcaccaaccagggcacctgctataaccagatcccattggtgaacttg
ggcgaccgcgttgaggccggacaggttctcgcagatggccccggtactcacaacggtgag
atgtcgctcggccgcaaccttcttgttgcgttcatgccatgggaaggccacaactacgag
gacgctatcatcctcaaccagcgtgttgtggaagaggacattcttacttcgatccacatc
gaggaacacgagattgatgcccgagacaccaaacttggtgcggaggagatcactcgtgag
attcccaatgtgtccgaggatgtgctcaaggatctcgatgagcgcggcatcgttcgcatc
ggtgctgatgtccgcgacggcgatatcttggtgggtaaggtcactcctaagggtgagacc
gagctgacccctgaagagcgcctgctgcgtgcaatctttggtgagaaggcacgtgaggtt
cgcgatacctctatgaaggtgcctcacggcgagaccggtaaggtcatcggcgttcgtcgt
ttctcccgtgaagacgatgatgatctcgcgcctggcgttaatgagatgattcgtgtctat
gttgcccagaagcgcaagatccaggacggcgataagcttgctggtcgccacggtaacaag
ggtgtcgttggcaagatccttccgcaggaagacatgccattcatgcccgacggtaccccg
gttgacatcatcctgaacacgcacggtgtgcctcgtcgtatgaacatcggccaggtgctg
gaagtccaccttggttggttggctgctgccggttggaagatcgaccccgaggaccccgct
aacgtcgagctgcttaagacgcttcctgaggatctgtacgacgttcctgctggttcgctt
accgcaacaccagtgttcgacggtgctaccaacgaggaagttgcaggcctcctagccaat
tctcgtccaaaccgcgacggcgatgtcatggtggatgcaaacggcaaggcacagcttttc
gacggtcgttccggcgagcctttcccatacccagtgtctgtcggctacatgtacatgctg
aagctgcaccacttggttgatgagaagatccacgcacgttctaccggcccttactccatg
attactcagcagccgttgggtggtaaggctcagttcggtggacagcgcttcggcgaaatg
gaggtgtgggcaatgcaggcttatggcgctgcctacacgcttcaggagcttctgaccatc
aagtctgatgacgtagtcggacgtgtgaaggtctacgaggcaatcgttaagggcgagaac
attccagatccgggtatccctgagtccttcaaggtgctcctcaaggagcttcaatcgctg
tgcttgaacgtggaagttctttctgcagacggcactccgatggagctgtccggttcggat
gacgacgagttcgaccaggccggtgcctcactgggcatcaacctgtctcgcgacgagcgt
tccgacgccgacatcgcctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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