KEGG   Campylobacter ornithocola: CORN_1013
Entry
CORN_1013         CDS       T06736                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
coj  Campylobacter ornithocola
Pathway
coj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:coj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CORN_1013 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:coj03019]
    CORN_1013 (rnr)
   03016 Transfer RNA biogenesis [BR:coj03016]
    CORN_1013 (rnr)
Enzymes [BR:coj01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     CORN_1013 (rnr)
Messenger RNA biogenesis [BR:coj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CORN_1013 (rnr)
Transfer RNA biogenesis [BR:coj03016]
 Prokaryotic type
  tRNA degradation factors
   CORN_1013 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB
Other DBs
NCBI-ProteinID: QKF57526
UniProt: A0A6M8MVZ2
Position
995423..997363
AA seq 646 aa
MKELFNQLSYGLNASEITNKNKQLIRELLTCDIIKFYKNKYYLKNGFTFGKIDISANGTG
FLESFDDAFKRDLLIENKNLKGANYADIVVAKLLPIKKKRPSAKVALILKRAHKTSLVMT
KKYGEAILGINIQTGLTCALKASQKSLKVLPLGTILKIENHDNNITEVIGHIDDDFVDEK
ISLALFNKNAIFDNLCENEARAYGNEVDASMYPSRKDLRNLNFCTIDPIDAKDFDDAIYY
DKNEHAIYIAIADVSAYVHAYSAIDKEARSRGFSIYFPHIAIPMLPRSLSENICSLKPNE
DRLAFCFKISLDQNNEVIKEELFEAIINSKRRFNYDEVDEYLQTHEDLGVINWLYEVFKI
TQNLRKKRLKNACEFKTQELRMTLDKNNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI
NIGVFRNHLSPDYKKIDQLLADLSTLSIDINPKNNIIELFKDIQILANELNIREEVDKLI
IKAQKKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINNDEKMFNYLLLN
IQNTCEELSLLEREADKVAWHFMDRKFARWAKENVGKRFKALVIENQSSLQVKLNDEIKG
ALITIIGSNANLLENVEVEITEVDIVGAKIFGKITKHFSLERNQNV
NT seq 1941 nt   +upstreamnt  +downstreamnt
atgaaagaattatttaatcaactaagctatggtctaaatgctagtgaaattaccaataaa
aataagcaactcatcagagagttattaacctgtgatattattaaattttataaaaataaa
tactacttaaaaaatggttttacttttggcaagattgacatttcagctaatggaacagga
tttttagaaagttttgatgatgcttttaagcgtgatttgctcatagaaaataaaaattta
aaaggagcaaactatgctgatatagttgtagcaaaactactccctattaaaaaaaagcgt
ccgagtgctaaagttgctttaatacttaaacgtgctcataaaacttctttagttatgact
aaaaaatacggcgaagcaatccttgggataaatattcaaacaggactcacttgtgcttta
aaagcctctcaaaaatccttaaaagttttaccattaggaactattttaaaaatagaaaat
catgataacaacattaccgaagtgataggacatattgatgatgattttgtagatgaaaaa
atttctttagcactttttaataaaaatgcaatttttgataatctatgtgaaaatgaagca
agagcttatggaaatgaagttgatgcaagcatgtatccttcaagaaaagatcttagaaat
ttaaatttttgcaccattgatccaattgatgcaaaagactttgatgatgcgatttattat
gataaaaatgaacatgctatttatatagctatagctgatgtgagtgcttatgtgcatgct
tatagtgctattgataaagaagcaagatcaaggggtttttcgatttattttcctcatatt
gctatacctatgctaccaagatctttgagtgaaaatatttgttcactaaaacctaacgaa
gatagattagcattttgttttaaaataagtttagatcaaaacaacgaagtgattaaagaa
gagctttttgaggctattattaactcaaaacgccgttttaattacgatgaagttgatgag
tatttacaaacacacgaagatttaggtgtaattaattggctttatgaagtttttaaaatc
actcaaaatttacgtaaaaaacgtctgaaaaacgcatgtgaatttaaaactcaagaactt
agaatgactttagataaaaataataaactcataaaaacacgtctcgaaaatgacactgct
tcgcataatttaattgaagattgtatgcttttagctaataaagccgcagcaaaactcatt
aatataggagtttttagaaatcacttaagtcctgattataaaaaaatagatcaattgcta
gctgatctttcaacacttagtatagatattaatcctaaaaacaatatcatagaactattc
aaagatattcaaatcttagcaaatgagctaaatataagagaagaagttgataaactcatc
atcaaagcgcaaaaaaaggcagaatattctagtgaaaatgcaggacattttggtttaggt
tttgataaatatacccattttacaagccctattagaagatattctgatcttattttacat
agacttttaaaagctaaaatcaacaatgatgaaaaaatgtttaattatttgcttttaaat
atacaaaacacttgtgaggaattaagcttattagaaagagaagcagataaagttgcatgg
cattttatggatagaaaatttgcaagatgggcgaaagaaaatgtaggaaaaagatttaaa
gctttggtaattgaaaatcaaagctcattacaagtaaaattaaatgatgaaattaaagga
gctttgattaccatcataggctcaaacgcgaatttattagaaaatgtagaagtagaaatt
accgaagtagatattgttggtgctaaaatttttggtaaaatcactaagcattttagttta
gaaagaaatcaaaatgtataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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