KEGG   Colwellia sp. PAMC 21821: A3Q33_06490
Entry
A3Q33_06490       CDS       T04816                                 
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
colw  Colwellia sp. PAMC 21821
Pathway
colw02020  Two-component system
colw02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:colw00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A3Q33_06490
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    A3Q33_06490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:colw03021]
    A3Q33_06490
Transcription machinery [BR:colw03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A3Q33_06490
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR
Other DBs
NCBI-ProteinID: ARD43994
Position
1538327..1539835
AA seq 502 aa
MRPTLQLRIGQQLTMTPQLQQAIKLLQLSTLDLQQEIQEALESNPLLEIDESFDNNSEST
PDNLEEAYSAGVGESKEMASSDGSEDSAPSIDEISSSEGLAKTDIPEELNSDSTWDDNFS
ASASSGGVGHASEDYTYQGETKDSLQDHLMWQMQLTPFSDTDRTIAIAIIEAIDEAGYLT
VTADEILESVGIDDVELDEVEVVLKRINVFDPVGVAARSIPECLLIQLNQFAKDTPWLAE
SKLAVTEHIDLLGNRDYRQLMRKLRIKEDQLREVIRLIQSLDPRPGDSVIKSEEQYVIPD
VSVEKKNGRWTVELNPDTAPKLSVNQQYAAMSRSMKSSADSQFIRSNLQEAKWFIKSLES
RNDTLLKVSNCIVQRQQGFFEHGPEAMRPMVLNDIAEAVDMHESTISRVTTQKYMHTPRG
IFELKYFFSSHVSTENGGECSSTAIRELIKKLVAAEIPAKPLSDSKIADILAEQGIKVAR
RTIAKYRESLSIPPSNQRKSLL
NT seq 1509 nt   +upstreamnt  +downstreamnt
atgcgtcctactctgcaactccgtatcggacaacaattaacgatgaccccgcaattgcag
caggcgatcaagctactgcaattatcgactttggatctccagcaagaaattcaagaagca
ctcgaaagtaatcctttacttgaaattgatgaatcttttgataataactctgaaagtacc
cctgacaatttagaagaagcatactcggcaggcgttggcgaaagtaaagaaatggcctcc
tccgatggtagcgaagattctgcccccagtatcgatgaaattagctcctcagaaggttta
gccaaaaccgatattcccgaagaattaaacagtgatagcacttgggatgataactttagt
gctagcgctagcagcggcggtgttggtcacgcatcagaagattatacctatcagggtgaa
acgaaagactcactacaagaccaccttatgtggcaaatgcaactcacgccatttagcgat
accgacagaaccattgccatcgccattattgaagccattgatgaagccggctatttaacg
gtgaccgcagatgagatcttagaaagcgttggtatagacgatgtagaactcgatgaagtt
gaagtggtactaaaacgaattaacgtttttgatcccgttggcgtggctgcccgttcaatt
cctgagtgtttacttatccagctcaatcaatttgcgaaagatacgccttggctagcagaa
agtaaattagccgtcactgagcacattgacttgcttggtaatcgcgattatcgacaattg
atgcgtaaattgcgcattaaagaagatcaattacgcgaagttattcgcttgatccaatct
ttagatcctcgcccgggtgatagcgtcataaaaagtgaagaacaatacgtaattcctgat
gtctccgttgagaagaaaaatggtcgttggacggtagagctcaatcccgatacagcacct
aaattatcagttaatcaacaatatgccgccatgtctaggtcaatgaaatcatctgctgat
agtcagttcattcgctcgaatttacaagaagcaaaatggtttatcaaaagtttagaaagt
cgcaatgataccttattaaaagtttcaaattgcattgtacaacgccaacaaggtttcttt
gaacatggtcctgaagctatgcgacctatggtgttaaatgatattgcagaagctgtagac
atgcatgaatcaaccatttctcgtgttacgacacaaaaatacatgcacacaccgagaggc
atttttgagcttaaatactttttctctagccacgtaagtactgaaaatggcggtgagtgc
tcttcaacagctattcgtgaattaattaaaaaactcgtcgctgccgaaatacccgcaaag
ccattaagcgacagtaaaatcgcagatatattagctgaacaaggtataaaagtagcgagg
agaaccattgccaagtatcgagagtcgctctctataccgccgtcaaatcaacgtaaaagc
ctattgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (12)   

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