KEGG   Colwellia sp. MT41: CMT41_11805
Entry
CMT41_11805       CDS       T04159                                 
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
com  Colwellia sp. MT41
Pathway
com03030  DNA replication
com03410  Base excision repair
com03420  Nucleotide excision repair
com03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:com00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CMT41_11805 (ligA)
   03410 Base excision repair
    CMT41_11805 (ligA)
   03420 Nucleotide excision repair
    CMT41_11805 (ligA)
   03430 Mismatch repair
    CMT41_11805 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:com03032]
    CMT41_11805 (ligA)
   03400 DNA repair and recombination proteins [BR:com03400]
    CMT41_11805 (ligA)
Enzymes [BR:com01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CMT41_11805 (ligA)
DNA replication proteins [BR:com03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CMT41_11805 (ligA)
DNA repair and recombination proteins [BR:com03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CMT41_11805 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CMT41_11805 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CMT41_11805 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CMT41_11805 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH_3 DZR_2 HHH
Other DBs
NCBI-ProteinID: ALO35329
UniProt: A0A0S2JH32
Position
complement(2755751..2757820)
AA seq 689 aa
MSNAEDKISQLQQQLNQYNHEYYLLDQPSVPDAEYDRLMNALIALETENPELKTIDSPSQ
KVGGQALKSFTQVTHQQPMLSLDNVFSLDDFHAFVKRVKDRLNSDQSLAFCAEPKLDGLA
VSLRYEQGILVQAATRGDGRVGENITTNIRTIKSIPLKLRGIAGKDFPSIVEVRGEVFMP
KASFNALNELANKRGDKGFANPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGDFTAAN
GESKDLTHEFFADSHHQRLCQLKTLGLPMCPEVRLLANEQAADGFYQDILAKRSALSYEI
DGTVFKVDDISLQQRLGFVARAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLK
PIFVGGVTVSNATLHNQDEITRLGLKINDTVVIRRAGDVIPQIVSVVVDKRPDNALDIVF
PTTCPVCDSAVAKPEGEAVLRCTAGLFCAAQRKEAIKHFASRKAHDVDGLGDKLVEQLVD
ENLINTPADLFKLTEIQVSMMARMGKKSATNLIAGLEKAKNTSLAKFIYGLGIREVGEAT
AANLANHFYTLTAIESASLEALQDVSDVGEIVARNIINFFKEEHNLAVVAGLSAVMNWPT
IEMKSAEQLPLNEQVFVLTGTLTQMGRAEAKTALQSLGAKVSGSVSKKTHFVVAGDKAGS
KLTKAQDLGISILTEDALVALLSEHGVTI
NT seq 2070 nt   +upstreamnt  +downstreamnt
atgtcaaatgccgaagataaaattagccaattgcaacagcagcttaatcaatacaatcat
gaatattatctattagatcaacctagcgtacctgatgctgaatatgatcgcttaatgaac
gcattaattgctttagaaactgaaaaccctgagctaaagaccattgattcacctagccaa
aaagttggtgggcaagccttaaaatcctttactcaagtcactcaccaacagccaatgctt
tcccttgataatgtcttttctctagatgattttcatgcttttgttaagcgtgtcaaagat
aggttgaatagcgatcagtccttggctttttgtgctgagcctaaattagatggcttagcg
gtaagtttacggtatgagcaaggcattttagtacaggcagctacacgtggtgatggccgt
gtcggtgaaaatattaccaccaacatacgtaccattaaatccattccactgaaattaagg
ggcatagcaggtaaagattttccgagtattgttgaagtacgtggcgaagtttttatgcct
aaagccagctttaatgccttaaatgaactggctaacaaacgtggtgacaaaggttttgct
aatccccgtaatgccgctgcgggcagcctacgacaacttgattccaaaatcaccgctaag
cgtaatttagccttttacgcctatagtttaggatttgttggtgatttcaccgctgctaat
ggcgaaagcaaagacttaacccatgaattctttgccgactcacaccaccaaaggctgtgc
cagcttaaaacactcggtttacctatgtgtccagaagtacgtttactggccaatgaacaa
gcagctgatggtttttatcaagatatcttggctaaacgtagcgccttaagttatgaaatt
gacggtaccgtattcaaggttgatgatatatctttacaacaacgcttgggttttgtcgct
cgcgcgccacgctgggccattgcttataaattcccagctgaagaagagttaacctgtgtc
gaagatgttgagtttcaagttggacgtaccggcgccattaccccagtggctcggttaaaa
cctatttttgtcggtggcgtgacggtttctaatgcgaccctacataaccaagatgaaatt
actcgcttagggttgaaaataaatgacaccgtcgttattcgccgagcgggtgatgttatt
ccgcaaattgttagtgtggtagtggataaacgaccggataatgccctagatattgtcttt
ccgaccacgtgtcccgtgtgtgactctgcggtggctaaaccagagggtgaagcggtactt
aggtgtacggcggggctcttttgtgcggcgcaacgaaaagaagcgattaaacactttgct
tctcgaaaagcccatgatgtcgacggattaggcgataaacttgttgagcagcttgttgat
gaaaatttgattaataccccggctgatttatttaaactgaccgaaattcaggtcagtatg
atggcgcgcatgggtaagaagtcagcgactaatttaatcgctggccttgaaaaagcaaaa
aataccagcttagcgaaatttatttatggcttaggtatacgggaagtaggtgaagcaacg
gcagctaacttggcgaatcatttctataccttaacggccattgaaagtgcatcccttgaa
gcattacaagatgtcagtgatgtcggcgaaattgtcgcgagaaatatcattaactttttt
aaagaagagcataacttagctgtggttgctgggctaagcgcggtgatgaattggcctact
atcgaaatgaaatcggctgagcagttacctcttaacgagcaggtttttgtcttaacgggc
acgttaacgcaaatgggcagagcagaggcaaaaacagcgttgcaatcattaggcgcgaaa
gtgtctggcagtgtttcgaagaaaacccactttgttgttgccggtgataaggccggctca
aaactaactaaagcgcaagacttaggtatctcgatacttactgaggatgccttggtggca
ttacttagcgagcatggtgtgactatttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (30)   

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