KEGG   Colwellia sp. MT41: CMT41_13950
Entry
CMT41_13950       CDS       T04159                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
com  Colwellia sp. MT41
Pathway
com03410  Base excision repair
com03430  Mismatch repair
com03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:com00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CMT41_13950
   03430 Mismatch repair
    CMT41_13950
   03440 Homologous recombination
    CMT41_13950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:com03400]
    CMT41_13950
DNA repair and recombination proteins [BR:com03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     CMT41_13950
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     CMT41_13950
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CMT41_13950
SSDB
Motif
Pfam: RecJ_OB DHHA1 DHH
Other DBs
NCBI-ProteinID: ALO35696
UniProt: A0A0S2JIF5
Position
complement(3278710..3280497)
AA seq 595 aa
MSKKIIRRAQVATAHLPDTLPEIIKQIYASRGMKSAQELELNVARLQGMTDDTALMGMDK
ACQLLHQALLSKTAIVIVGDFDADGATSTALMMIALSLFGSNHHDFIVPNRFEYGYGLTP
EIVDIAAQQQAQMIITVDNGISCIAGVKRAKDLGMQVIVTDHHLPGHTLPIADAIVNPNQ
VGCNFPSKALAGVGVAFYLMLGLRKYCRERNYFSEQGIAEPNIAQLLDLVALGTVADVVS
LDANNRILVDQGLKRIRAGQTRPGIQALIEIANKNQQRLVASDFGFAIAPRINAAGRLDD
MSYGINCLLATDLSTARVMAAELDDLNKTRREIEQGMQVEAERVMNSVDLAGGLNQESED
KPLPFAIALYQKDWHQGVIGIVAGRLKEKCHRPCIIFANASDDSEQGDNAEIKGSARSIP
GLHIRDLLEHIDSQNPGLILKFGGHAMAAGLSIKQKDFTQFKQQFNELAEKWLKPEDLAS
IILSDGELSADLLTLEFAEQLREAGPWGQNFPEPLFDDTFTIVQQRIVGEKHLKIVVQKD
TAQGKQVFDGIAFNVDVKAWPNAQAKQVHLAYRLDVNEFRGKRTVQLMIEDIRVV
NT seq 1788 nt   +upstreamnt  +downstreamnt
atgagtaaaaaaatcattcgccgagcacaggtcgcaactgctcatttgccagatacttta
ccggaaatcataaaacaaatttatgccagccgaggcatgaaatctgcacaagaacttgaa
cttaatgttgctcgtttacaaggtatgacggatgacaccgcgctgatgggcatggacaag
gcctgtcaattattacatcaagcactattaagtaaaacagctattgttattgttggtgac
tttgatgccgatggcgctaccagtaccgccttaatgatgattgcgcttagtctgtttggt
agtaaccatcatgactttattgtgccaaaccgtttcgaatatggttatggcttaacccct
gaaattgttgatattgctgcgcagcaacaagcacaaatgataattaccgtcgataacggc
attagctgtattgccggtgttaaacgcgctaaagatcttggcatgcaagtgattgttact
gaccatcatttacctgggcatacgttacccattgccgatgccattgtgaatccgaatcaa
gttggttgtaatttccccagtaaagcccttgccggtgttggtgtcgccttttacctcatg
ttagggttaagaaagtattgtcgcgaacgtaactatttttctgagcaaggaattgctgag
cctaacattgctcagttattggatctggttgctttagggaccgtggccgatgtggtgtct
cttgatgctaataatcgtattttagttgaccaaggtttaaaacgtattcgtgcgggtcaa
acacggcctggcattcaagcattgatagaaatagccaataagaaccagcaaaggctagtt
gccagtgactttggctttgccatagctccaagaataaatgccgcaggacggttagatgat
atgtcttatggtatcaattgcttactggctactgacttatcgactgctcgcgtaatggcg
gcagagcttgatgacttaaataaaacccgtcgagaaatagaacagggcatgcaagttgaa
gcagagcgagtgatgaactcagttgacttagctggcggtctcaatcaagaaagtgaagat
aagccgctaccttttgctattgccttatatcaaaaagattggcaccaaggggttattggt
attgtcgccgggcgactaaaagaaaaatgtcaccgtccgtgtattatttttgctaatgcc
agtgatgatagcgagcagggtgacaatgctgaaattaaaggctcggcgcgatcaattcct
ggcttacatatacgtgatttactcgagcatattgatagccaaaatccgggcttaattctt
aagtttggtggtcatgccatggcggctggtttatcgattaagcaaaaagactttactcaa
ttcaagcaacaatttaatgaattggctgaaaaatggctaaaacctgaagacttagcgagc
atcattctttccgatggtgaattaagtgctgatctgcttacccttgaatttgccgagcaa
ttacgagaagccggtccttggggacaaaattttcctgagcctttatttgatgataccttc
accatagtgcagcagcgaattgtgggggaaaaacatttgaaaattgtggtacaaaaagac
acggctcaaggtaaacaagtctttgatggcatagcttttaatgttgatgttaaagcttgg
ccaaatgcccaagcgaaacaagttcaccttgcttaccgtctggatgtgaatgaattcaga
ggtaaacgtaccgtgcagttgatgattgaagatattagggtcgtttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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