KEGG   Candida orthopsilosis: CORT_0A00570
Entry
CORT_0A00570      CDS       T02488                                 
Name
(RefSeq) Lsm6 Lsm protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
cot  Candida orthopsilosis
Pathway
cot03018  RNA degradation
cot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CORT_0A00570
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CORT_0A00570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cot03019]
    CORT_0A00570
   03041 Spliceosome [BR:cot03041]
    CORT_0A00570
Messenger RNA biogenesis [BR:cot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CORT_0A00570
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CORT_0A00570
Spliceosome [BR:cot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CORT_0A00570
SSDB
Motif
Pfam: LSM SM-ATX LSM14 Hfq
Other DBs
NCBI-GeneID: 14537567
NCBI-ProteinID: XP_003865891
UniProt: H8WVH7
Position
1:complement(join(118865..118887,118953..119169))
AA seq 79 aa
MSDSEFDRTDPSKFLGDLIGSPVRVKLYSGVEYRGDLQTIDGYMNVVLENGKEFINGDVT
RDYGDLFLRGNTVLYITEN
NT seq 240 nt   +upstreamnt  +downstreamnt
atgtcagactctgaatttgatagaactgatccatccaagttcttaggtgacctaataggc
tctccagtgagagtcaagttgtacagtggagttgaatatcgcggtgacttgcaaaccatt
gatgggtacatgaatgtcgtattagagaatggtaaagaatttatcaatggcgacgtaact
agagactatggtgacttgtttcttagaggaaacactgttttgtacatcactgaaaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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