KEGG   Candida orthopsilosis: CORT_0A04670
Entry
CORT_0A04670      CDS       T02488                                 
Name
(RefSeq) Ccr4 component of the Ccr4-Pop2 mRNA deadenylase
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
cot  Candida orthopsilosis
Pathway
cot03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cot00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CORT_0A04670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cot03019]
    CORT_0A04670
Enzymes [BR:cot01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     CORT_0A04670
Messenger RNA biogenesis [BR:cot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CORT_0A04670
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     CORT_0A04670
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 CERK_C VIR_N TFIIA LRR_6
Other DBs
NCBI-GeneID: 14537369
NCBI-ProteinID: XP_003866295
UniProt: H8WWN1
Position
1:1009251..1011620
AA seq 789 aa
MNLASKFQQNQGQQPQSNLQAQQILLQQLHQGQSHPPPPPPPPPQQQQQATSNGLNAAFQ
PNESFNDNLNGLYQNNYSRAQPNLQQQQYFPQFQQNQSKQAGGNGLNIGSGASQLQQPYQ
ANHLPRQVPHLQQQFYNQHQAAALQKQQQQQQQQQQQQQQQQQQQSLHQAQQIQLQGSQL
QTPIQKASTLHVDNPNTSFWQHQQQLCQLSRSSTDPHNYARQYASNSRKLKNPYAETKSI
GLIEATKVIVASIEEEEQKKKLATRDPTSAALLHNKKITQDLDDDSMEEQRMRLKTQGRQ
LWCQLDLSGQGLVNLSPRLFQYDFLESLYLNNNKLTSIPPEISKLRSLRTLDLSHNRLSE
LPSELGLCFNLRFLYLFDNNIKSLPASFGNLFELQFLGVEGNPLDLNIANLVAEKGTKEL
IAAIRDQKSTIASPEPRHWLRVEDDGEVVDTNEPYKQEQSTGNVFTLMSYNTLCQHYATP
KMYKFTPSWALQWEYRRDLLEKEVLNYSTDIICMQEVETRTYMEFWGPLLAQKGYKGLFF
NKTRSKTMSENDSKKVDGCATFYKVDKFTLVHKQNFEYNSVCMGSDKYKKTKDLFNRFMN
KDNIALISYLEHKETGERICFVNTHLHWDPAFNDVKTLQIGILLEELQGFIKKYQQTSSM
EEVKKAPIVICGDFNSVKQSAVYQLFSTGSSKDHSDLSGKDYGKFTESGFHHPFKLKSAY
DAIGELPFTNLSPSFTDDIDYIWYSTSKLQVRGLLGEIDKKYVSHCIGFPDPNFPSDHVP
ILAKFQIKK
NT seq 2370 nt   +upstreamnt  +downstreamnt
atgaatctagctagtaaatttcaacagaatcagggccaacaacctcaatccaaccttcag
gcacaacaaattttgttacaacagcttcaccaagggcaatctcatccaccaccaccgcca
ccaccaccaccacaacaacaacaacaggctacatccaatgggctaaatgctgcattccaa
ccaaatgagagtttcaatgacaacttgaatggcctatatcaaaataattacctgcgagct
caaccaaatttacaacaacaacaatatttcccccagtttcaacaaaatcaactgaaacaa
gctggaggaaatggtctcaacattgggagtggtgcatcacaattgcaacaaccatatcag
gcaaatcacctaccaagacaagttccccatcttcaacaacaattctataatcaacatcaa
gctgcggcgcttcaaaagcagcaacagcagcagcagcagcagcaacaacaacaacaacaa
caacaacaacagcagagcctacaccaagcacaacagatacaattgcaaggatctcaatta
caaactcctattcaaaaggctagcactttgcacgttgataatccaaacactagcttttgg
cagcatcaacaacaattgtgtcaactttcaaggtcatctactgatcctcataactatgca
agacaatatgcatccaattcgaggaaattgaagaacccatatgctgaaactaaatccatt
gggcttattgaagcgactaaagtcattgttgcaagtattgaagaagaagaacagaaaaag
aaacttgcaactagggatcctactagtgcagcattgttgcataataagaaaattactcaa
gatcttgacgatgattcaatggaagaacaaaggatgcgattgaagactcaaggccgtcaa
ttatggtgtcaacttgatttgagtggacaaggattggttaatctttcacccaggttattt
cagtatgattttttggagtcgttatatttgaacaataacaaattgactagtatacctcct
gaaattagcaaattgagaagtttacgaactctagatttatcacacaaccgacttagtgaa
ttgccatctgagcttggattatgtttcaatttgaggtttttgtatctttttgacaataac
atcaaatccctacctgcttcatttggtaacttgtttgaacttcaatttcttggtgttgaa
gggaacccacttgatttgaacattgccaatttggttgctgagaagggtactaaggagcta
atagccgcaattagagatcaaaagtcgacaatagcatcacctgagccacgccattggttg
cgagtggaagatgatggagaggttgttgataccaacgagccatacaaacaggagcaaagt
acaggtaatgtattcacgttgatgtcctacaacactttgtgtcaacattatgctacgcca
aaaatgtacaagtttactccatcgtgggcattacaatgggagtatagaagagacctttta
gagaaggaggttttgaactatagtactgatattatatgtatgcaagaagttgaaactaga
acatacatggagttttggggaccgttgttagcacaaaagggatacaagggattgtttttc
aataaaacaagatcaaagacaatgagcgaaaatgattcaaagaaggttgatggatgtgcc
acattttacaaagtggataagttcacattagtacacaagcaaaattttgaatacaatagt
gtctgcatgggatctgacaaatacaaaaagaccaaagatttgttcaacagattcatgaat
aaagataatatcgcgttgatatcatacttggaacataaggaaactggagaaagaatttgt
tttgtcaatactcatttacattgggatccagcatttaatgatgtcaagaccctacaaatt
ggaattttgttggaagaattgcaaggctttatcaagaaatatcaacagacctcgtcaatg
gaagaagttaaaaaggcgccaattgtcatatgtggcgatttcaattcagtcaaacaatcg
gctgtataccaattattttccaccggttcctccaaagatcattctgatttatctggtaaa
gattatggaaaattcactgaatctggattccatcatccattcaaattgaaatcagcttat
gatgcgattggagaattaccatttactaatctttcaccttcatttactgatgacattgat
tacatctggtattcaacttcgaaactacaagttagaggattactaggcgagattgataag
aagtatgtttcacattgtattggatttcctgatccgaatttcccatcggatcatgtgcct
atattagccaaatttcaaataaagaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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